The 2.0 version of rSNPBase

Variant report

Variant rs554344
Chromosome Location chr11:104895197-104895198
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:54 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr11:104887600-104896800 Weak transcription Placenta Placenta
2 chr11:104892600-104896400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
3 chr11:104892800-104896400 Weak transcription Primary T killer memory cells from peripheral blood blood
4 chr11:104893200-104895400 Enhancers Primary B cells from peripheral blood blood
5 chr11:104893200-104896000 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
6 chr11:104893400-104895200 Enhancers Sigmoid Colon Sigmoid Colon
7 chr11:104893400-104895600 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
8 chr11:104893600-104895400 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
9 chr11:104893600-104896400 Weak transcription Primary T regulatory cells fromperipheralblood blood
10 chr11:104893600-104898800 Weak transcription NHLF lung
11 chr11:104893800-104895600 Weak transcription Duodenum Mucosa Duodenum
12 chr11:104893800-104895800 Weak transcription Primary T helper cells PMA-I stimulated --
13 chr11:104893800-104896400 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
14 chr11:104893800-104897800 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
15 chr11:104893800-104899200 Weak transcription Fetal Lung lung
16 chr11:104893800-104899800 Weak transcription Colonic Mucosa Colon
17 chr11:104893800-104900200 Weak transcription Rectal Smooth Muscle rectum
18 chr11:104894000-104895400 Enhancers Rectal Mucosa Donor 31 rectum
19 chr11:104894000-104895600 Weak transcription Adipose Nuclei Adipose
20 chr11:104894000-104895600 Weak transcription Lung lung
21 chr11:104894000-104896000 Enhancers Fetal Intestine Large intestine
22 chr11:104894000-104896200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
23 chr11:104894000-104896200 Weak transcription Primary T cells from cord blood blood
24 chr11:104894000-104896600 Weak transcription Primary mononuclear cells fromperipheralblood Blood
25 chr11:104894000-104896800 Weak transcription Ovary ovary
26 chr11:104894000-104898400 Weak transcription Stomach Mucosa stomach
27 chr11:104894000-104903400 Weak transcription GM12878-XiMat blood
28 chr11:104894200-104895200 Enhancers Primary B cells from cord blood blood
29 chr11:104894200-104895800 Weak transcription Liver Liver
30 chr11:104894200-104896200 Weak transcription Rectal Mucosa Donor 29 rectum
31 chr11:104894200-104896800 Weak transcription Left Ventricle heart
32 chr11:104894200-104896800 Weak transcription Dnd41 blood
33 chr11:104894200-104898600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
34 chr11:104894200-104899800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
35 chr11:104894200-104904200 Weak transcription Stomach Smooth Muscle stomach
36 chr11:104894200-104905600 Weak transcription Esophagus oesophagus
37 chr11:104894400-104895200 Enhancers Small Intestine intestine
38 chr11:104894400-104895600 Weak transcription Primary hematopoietic stem cells short term culture blood
39 chr11:104894400-104895800 Weak transcription Primary T helper cells fromperipheralblood blood
40 chr11:104894400-104896600 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
41 chr11:104894400-104896800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
42 chr11:104894400-104900400 Strong transcription Breast Myoepithelial Primary Cells Breast
43 chr11:104894600-104895200 Weak transcription Primary neutrophils fromperipheralblood blood
44 chr11:104894800-104895200 Weak transcription Primary hematopoietic stem cells blood
45 chr11:104894800-104895600 Weak transcription Fetal Intestine Small intestine
46 chr11:104894800-104895800 Genic enhancers Primary monocytes fromperipheralblood blood
47 chr11:104894800-104895800 Genic enhancers Monocytes-CD14+_RO01746 blood
48 chr11:104894800-104896400 Weak transcription Primary T helper naive cells from peripheral blood blood
49 chr11:104894800-104897000 Weak transcription Primary T killer naive cells fromperipheralblood blood
50 chr11:104894800-104900200 Strong transcription Primary T cells fromperipheralblood blood

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Last update: Aug 31, 2015