The 2.0 version of rSNPBase

Variant report

Variant rs520001
Chromosome Location chr11:104894594-104894595
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:49 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr11:104887600-104896800 Weak transcription Placenta Placenta
2 chr11:104892600-104896400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
3 chr11:104892800-104896400 Weak transcription Primary T killer memory cells from peripheral blood blood
4 chr11:104893200-104894600 Flanking Active TSS Monocytes-CD14+_RO01746 blood
5 chr11:104893200-104894800 Weak transcription Primary T cells fromperipheralblood blood
6 chr11:104893200-104894800 Enhancers Primary hematopoietic stem cells blood
7 chr11:104893200-104894800 Weak transcription Primary Natural Killer cells fromperipheralblood blood
8 chr11:104893200-104894800 Enhancers Fetal Intestine Small intestine
9 chr11:104893200-104895400 Enhancers Primary B cells from peripheral blood blood
10 chr11:104893200-104896000 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
11 chr11:104893400-104895200 Enhancers Sigmoid Colon Sigmoid Colon
12 chr11:104893400-104895600 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
13 chr11:104893600-104895400 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
14 chr11:104893600-104896400 Weak transcription Primary T regulatory cells fromperipheralblood blood
15 chr11:104893600-104898800 Weak transcription NHLF lung
16 chr11:104893800-104895600 Weak transcription Duodenum Mucosa Duodenum
17 chr11:104893800-104895800 Weak transcription Primary T helper cells PMA-I stimulated --
18 chr11:104893800-104896400 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
19 chr11:104893800-104897800 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
20 chr11:104893800-104899200 Weak transcription Fetal Lung lung
21 chr11:104893800-104899800 Weak transcription Colonic Mucosa Colon
22 chr11:104893800-104900200 Weak transcription Rectal Smooth Muscle rectum
23 chr11:104894000-104894800 Enhancers Primary monocytes fromperipheralblood blood
24 chr11:104894000-104895400 Enhancers Rectal Mucosa Donor 31 rectum
25 chr11:104894000-104895600 Weak transcription Adipose Nuclei Adipose
26 chr11:104894000-104895600 Weak transcription Lung lung
27 chr11:104894000-104896000 Enhancers Fetal Intestine Large intestine
28 chr11:104894000-104896200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
29 chr11:104894000-104896200 Weak transcription Primary T cells from cord blood blood
30 chr11:104894000-104896600 Weak transcription Primary mononuclear cells fromperipheralblood Blood
31 chr11:104894000-104896800 Weak transcription Ovary ovary
32 chr11:104894000-104898400 Weak transcription Stomach Mucosa stomach
33 chr11:104894000-104903400 Weak transcription GM12878-XiMat blood
34 chr11:104894200-104895200 Enhancers Primary B cells from cord blood blood
35 chr11:104894200-104895800 Weak transcription Liver Liver
36 chr11:104894200-104896200 Weak transcription Rectal Mucosa Donor 29 rectum
37 chr11:104894200-104896800 Weak transcription Left Ventricle heart
38 chr11:104894200-104896800 Weak transcription Dnd41 blood
39 chr11:104894200-104898600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
40 chr11:104894200-104899800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
41 chr11:104894200-104904200 Weak transcription Stomach Smooth Muscle stomach
42 chr11:104894200-104905600 Weak transcription Esophagus oesophagus
43 chr11:104894400-104894600 Enhancers Primary neutrophils fromperipheralblood blood
44 chr11:104894400-104895200 Enhancers Small Intestine intestine
45 chr11:104894400-104895600 Weak transcription Primary hematopoietic stem cells short term culture blood
46 chr11:104894400-104895800 Weak transcription Primary T helper cells fromperipheralblood blood
47 chr11:104894400-104896600 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
48 chr11:104894400-104896800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
49 chr11:104894400-104900400 Strong transcription Breast Myoepithelial Primary Cells Breast

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Last update: Aug 31, 2015