The 2.0 version of rSNPBase

Variant report

Variant rs531542
Chromosome Location chr11:104898402-104898403
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:61 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr11:104893600-104898800 Weak transcription NHLF lung
2 chr11:104893800-104899200 Weak transcription Fetal Lung lung
3 chr11:104893800-104899800 Weak transcription Colonic Mucosa Colon
4 chr11:104893800-104900200 Weak transcription Rectal Smooth Muscle rectum
5 chr11:104894000-104903400 Weak transcription GM12878-XiMat blood
6 chr11:104894200-104898600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
7 chr11:104894200-104899800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
8 chr11:104894200-104904200 Weak transcription Stomach Smooth Muscle stomach
9 chr11:104894200-104905600 Weak transcription Esophagus oesophagus
10 chr11:104894400-104900400 Strong transcription Breast Myoepithelial Primary Cells Breast
11 chr11:104894800-104900200 Strong transcription Primary T cells fromperipheralblood blood
12 chr11:104894800-104903200 Strong transcription Primary Natural Killer cells fromperipheralblood blood
13 chr11:104895000-104899400 Weak transcription Primary T helper naive cells fromperipheralblood blood
14 chr11:104895000-104904200 Weak transcription Psoas Muscle Psoas
15 chr11:104895200-104898600 Weak transcription Sigmoid Colon Sigmoid Colon
16 chr11:104895400-104899800 Weak transcription Spleen Spleen
17 chr11:104895400-104899800 Weak transcription NHEK skin
18 chr11:104895600-104902000 Strong transcription Adipose Nuclei Adipose
19 chr11:104895800-104898600 Strong transcription Primary monocytes fromperipheralblood blood
20 chr11:104895800-104898600 Strong transcription Primary T helper cells PMA-I stimulated --
21 chr11:104895800-104902000 Strong transcription Primary B cells from peripheral blood blood
22 chr11:104895800-104902200 Strong transcription Primary B cells from cord blood blood
23 chr11:104895800-104902200 Strong transcription Liver Liver
24 chr11:104895800-104904200 Weak transcription Fetal Muscle Leg muscle
25 chr11:104896000-104898800 Weak transcription Fetal Intestine Small intestine
26 chr11:104896000-104904200 Weak transcription NHDF-Ad bronchial
27 chr11:104896200-104898800 Strong transcription Rectal Mucosa Donor 29 rectum
28 chr11:104896200-104902200 Strong transcription Primary T cells from cord blood blood
29 chr11:104896200-104903800 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
30 chr11:104896400-104902000 Strong transcription Primary T regulatory cells fromperipheralblood blood
31 chr11:104896400-104902200 Strong transcription Primary T cells effector/memory enriched fromperipheralblood blood
32 chr11:104896400-104904000 Weak transcription Skeletal Muscle Female skeletal muscle
33 chr11:104896600-104902000 Strong transcription Primary mononuclear cells fromperipheralblood Blood
34 chr11:104896600-104903000 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
35 chr11:104896800-104899000 Strong transcription Primary T helper 17 cells PMA-I stimulated --
36 chr11:104896800-104901800 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
37 chr11:104896800-104902000 Strong transcription Dnd41 blood
38 chr11:104897000-104900400 Strong transcription Primary T killer naive cells fromperipheralblood blood
39 chr11:104897000-104902200 Strong transcription Duodenum Smooth Muscle Duodenum
40 chr11:104897400-104902200 Genic enhancers Primary T helper memory cells from peripheral blood 2 blood
41 chr11:104897600-104898600 Weak transcription Small Intestine intestine
42 chr11:104897600-104899400 Weak transcription Primary T killer memory cells from peripheral blood blood
43 chr11:104897600-104899600 Weak transcription Primary hematopoietic stem cells short term culture blood
44 chr11:104897600-104900200 Weak transcription Lung lung
45 chr11:104897600-104900800 Weak transcription Left Ventricle heart
46 chr11:104897800-104898600 Weak transcription Rectal Mucosa Donor 31 rectum
47 chr11:104897800-104898800 Strong transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
48 chr11:104897800-104899400 Weak transcription Placenta Placenta
49 chr11:104897800-104905600 Weak transcription Ovary ovary
50 chr11:104898000-104898800 Weak transcription Primary T helper naive cells from peripheral blood blood

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Last update: Aug 31, 2015