The 2.0 version of rSNPBase

Variant report

Variant rs489715
Chromosome Location chr11:104913453-104913454
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:58 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr11:104904400-104914200 Weak transcription Spleen Spleen
2 chr11:104906000-104914200 Weak transcription Right Ventricle heart
3 chr11:104906000-104914600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
4 chr11:104906200-104913600 Weak transcription NHLF lung
5 chr11:104906200-104914200 Weak transcription Ovary ovary
6 chr11:104906200-104914400 Weak transcription Left Ventricle heart
7 chr11:104906400-104914200 Weak transcription Stomach Mucosa stomach
8 chr11:104906400-104914200 Weak transcription GM12878-XiMat blood
9 chr11:104906600-104914200 Weak transcription Colonic Mucosa Colon
10 chr11:104906600-104915600 Weak transcription Skeletal Muscle Female skeletal muscle
11 chr11:104906800-104913800 Weak transcription Rectal Mucosa Donor 31 rectum
12 chr11:104907200-104913600 Weak transcription Breast Myoepithelial Primary Cells Breast
13 chr11:104908800-104914200 Weak transcription Lung lung
14 chr11:104910200-104915800 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
15 chr11:104912000-104914200 Enhancers Primary T killer memory cells from peripheral blood blood
16 chr11:104912200-104914000 Weak transcription Rectal Mucosa Donor 29 rectum
17 chr11:104912200-104914200 Weak transcription Adipose Nuclei Adipose
18 chr11:104912200-104915600 Weak transcription Placenta Placenta
19 chr11:104912400-104913600 Transcr. at gene 5' and 3' Primary monocytes fromperipheralblood blood
20 chr11:104912400-104913800 Enhancers Primary T helper memory cells from peripheral blood 2 blood
21 chr11:104912400-104914200 Weak transcription Rectal Smooth Muscle rectum
22 chr11:104912400-104915800 Weak transcription HepG2 liver
23 chr11:104912600-104913600 Weak transcription Primary T cells fromperipheralblood blood
24 chr11:104912600-104913600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
25 chr11:104912600-104913800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
26 chr11:104912600-104913800 Enhancers Primary T helper naive cells from peripheral blood blood
27 chr11:104912600-104913800 Enhancers Primary T helper cells fromperipheralblood blood
28 chr11:104912600-104913800 Weak transcription Fetal Lung lung
29 chr11:104912600-104913800 Weak transcription Sigmoid Colon Sigmoid Colon
30 chr11:104912600-104914000 Weak transcription Duodenum Smooth Muscle Duodenum
31 chr11:104912600-104914200 Weak transcription Primary hematopoietic stem cells short term culture blood
32 chr11:104912600-104914200 Enhancers Primary T helper 17 cells PMA-I stimulated --
33 chr11:104912600-104914200 Weak transcription Small Intestine intestine
34 chr11:104912600-104917800 Weak transcription ES-I3 Cell Line embryonic stem cell
35 chr11:104912600-104920800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
36 chr11:104912800-104913600 Weak transcription Primary B cells from peripheral blood blood
37 chr11:104912800-104913600 Weak transcription Hela-S3 cervix
38 chr11:104912800-104913600 Enhancers HUVEC blood vessel
39 chr11:104912800-104913800 Enhancers Primary T helper cells PMA-I stimulated --
40 chr11:104912800-104913800 Enhancers Primary T cells effector/memory enriched fromperipheralblood blood
41 chr11:104912800-104914000 Weak transcription Primary T killer naive cells fromperipheralblood blood
42 chr11:104912800-104914200 Weak transcription Colon Smooth Muscle Colon
43 chr11:104912800-104914200 Weak transcription Fetal Intestine Large intestine
44 chr11:104912800-104914200 Weak transcription Fetal Intestine Small intestine
45 chr11:104912800-104914800 Flanking Active TSS Primary B cells from cord blood blood
46 chr11:104913000-104913600 Enhancers Primary neutrophils fromperipheralblood blood
47 chr11:104913000-104913800 Active TSS Duodenum Mucosa Duodenum
48 chr11:104913000-104914200 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
49 chr11:104913000-104915000 Flanking Active TSS Primary T cells from cord blood blood
50 chr11:104913000-104916200 Active TSS Primary Natural Killer cells fromperipheralblood blood

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Last update: Aug 31, 2015