Variant report

Variant	rs4944178
Chromosome Location	chr11:77593221-77593222
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:77588081..77589729-chr11:77591308..77593403,2	K562	blood:

Extended variants
information (count: 203 )
Associated
traits (count: 10 )

rSNPs within LD-proxies of this variant (count:194)

rs_ID	r²[population]
rs10676933	0.87[EUR][1000 genomes]
rs11237271	0.81[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11237274	0.80[CEU][hapmap];1.00[CHB][hapmap];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1124590	0.89[CEU][hapmap];0.92[YRI][hapmap]
rs11823751	0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11824150	0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11825573	0.81[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11827357	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11828664	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12417232	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12417488	0.81[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12417760	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12417823	0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12418152	0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12418476	0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12418551	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12418559	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[YRI][hapmap];0.98[EUR][1000 genomes]
rs12418734	0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12418844	0.81[CEU][hapmap];0.84[CHB][hapmap];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12419685	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12419883	0.80[YRI][hapmap]
rs12420092	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12420290	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12420401	0.81[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12420528	0.90[YRI][hapmap]
rs12421391	0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12421699	0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12574507	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12575014	0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12575150	0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12577951	0.91[ASW][hapmap];0.89[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];0.91[TSI][hapmap];0.92[YRI][hapmap]
rs12806790	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1544272	0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1544273	0.81[CEU][hapmap];1.00[CHB][hapmap];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1544274	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17135800	0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17135807	0.81[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17135809	0.81[CEU][hapmap];0.87[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17135811	0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17135905	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17135969	0.91[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1892868	0.82[ASW][hapmap];1.00[YRI][hapmap]
rs1892869	0.81[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1893901	0.81[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1986474	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.95[GIH][hapmap];0.86[JPT][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2032415	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2051484	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];0.93[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2154973	0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2154988	0.81[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2186564	0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.93[JPT][hapmap];0.85[MEX][hapmap];0.85[MKK][hapmap];0.92[TSI][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2186573	0.81[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2298820	0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28610388	0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28930682	0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34446294	0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35546645	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35774637	0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3758664	0.82[EUR][1000 genomes]
rs3781617	0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3819211	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3886195	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3949117	0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4245454	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4245455	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4269952	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4448713	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4491258	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4531493	0.81[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4578411	0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4944175	0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4944176	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];0.93[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4945197	0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4945202	0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4945203	0.81[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4945204	0.81[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4945205	0.81[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4945209	0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4945210	0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4945211	0.81[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4945212	0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4945213	0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4945214	0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4945215	0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4945217	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4945218	0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4945219	0.81[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4945223	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55881536	0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56097222	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56372481	0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs56817084	0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs57222975	0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs57362996	0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57687790	0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs57935035	0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs58020660	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58367448	0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs58393579	0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs58395847	0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs58914857	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59191974	0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59239088	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59363412	0.80[EUR][1000 genomes]
rs59404463	0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs59520338	0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs60143695	0.80[EUR][1000 genomes]
rs60186049	0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60208812	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60509203	0.80[EUR][1000 genomes]
rs608539	0.81[CHB][hapmap]
rs60948958	0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61201484	0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61361232	0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61397357	0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61576111	0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61605540	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6592740	0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6592742	0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs66472445	0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs66622455	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs66658383	0.98[EUR][1000 genomes]
rs66664368	0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs66675536	0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs66681087	0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs667213	0.81[CHB][hapmap]
rs66738005	0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs66895426	0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs66924979	0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs66991096	0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs67035387	0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs67195676	0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs67200285	0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs67230007	0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs67241586	0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs67291795	0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs67313689	0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs67555375	0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs67606281	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs67680371	0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs67724005	0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs67736392	0.98[EUR][1000 genomes]
rs67769372	0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs67775318	0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs67875187	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs68146267	0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7104540	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7105526	0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7106113	0.81[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7109199	1.00[CHB][hapmap];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7109704	0.98[EUR][1000 genomes]
rs7110322	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7110844	0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7113415	0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7116671	0.81[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7118516	0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7119471	0.81[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7119665	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7120465	0.85[CHB][hapmap];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7123204	0.81[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7124030	0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7124116	0.81[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7124753	0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7126909	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7127803	0.81[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs720383	0.81[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72931818	0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72931829	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72935512	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72939439	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72939448	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72939452	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72939456	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72947606	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72947636	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72947653	0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72949614	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72949656	0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73491984	0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73495923	0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7482006	0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7930066	0.81[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7931215	0.81[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7932057	0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7935050	0.80[YRI][hapmap]
rs7936904	0.81[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7937983	0.81[CEU][hapmap];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7939623	0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7941418	0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7946876	0.91[ASW][hapmap];0.90[GIH][hapmap];0.86[MEX][hapmap];0.85[YRI][hapmap]
rs7947859	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7950631	0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7951172	0.81[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9667816	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9667819	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050891	chr11:77416645-77788002	Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	nsv1037292	chr11:77431583-77745934	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv541092	chr11:77431583-77745934	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
4	nsv949316	chr11:77454076-77769885	Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
5	nsv520740	chr11:77553638-77997936	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
6	nsv1035753	chr11:77577384-77866386	Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
7	nsv541093	chr11:77577384-77866386	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
8	nsv555453	chr11:77577494-77618441	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv524537	chr11:77583266-77593221	Strong transcription Genic enhancers Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:10)

SNP	Gene	Cis/trans	Tissue	Source
rs4944178	AAMDC	cis	Artery Tibial	GTEx
rs4944178	RP11-91P24.7	cis	Thyroid	GTEx
rs4944178	RP11-91P24.7	cis	Artery Tibial	GTEx
rs4944178	RP11-91P24.6	cis	Artery Tibial	GTEx
rs4944178	RP11-91P24.6	cis	Thyroid	GTEx
rs4944178	CLNS1A	cis	cerebellum	SCAN
rs4944178	AAMDC	cis	Thyroid	GTEx
rs4944178	RSF1	Cis_1M	lymphoblastoid	RTeQTL
rs4944178	KCTD21	cis	parietal	SCAN
rs4944178	INTS4	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:77566200-77594600	Weak transcription	Colon Smooth Muscle	Colon
2	chr11:77567800-77594800	Weak transcription	Brain Angular Gyrus	brain
3	chr11:77568200-77594600	Weak transcription	Fetal Kidney	kidney
4	chr11:77569000-77597600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr11:77577400-77630800	Weak transcription	Fetal Heart	heart
6	chr11:77578600-77597400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr11:77578800-77601400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr11:77579200-77625000	Weak transcription	HMEC	breast
9	chr11:77579800-77597800	Strong transcription	Skeletal Muscle Female	skeletal muscle
10	chr11:77580000-77597800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr11:77580200-77597400	Strong transcription	Monocytes-CD14+_RO01746	blood
12	chr11:77580600-77596000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr11:77580800-77597800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr11:77581000-77597400	Weak transcription	Psoas Muscle	Psoas
15	chr11:77582000-77598000	Strong transcription	Stomach Smooth Muscle	stomach
16	chr11:77582600-77596000	Strong transcription	Primary T cells from cord blood	blood
17	chr11:77583400-77670600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
18	chr11:77583400-77690000	Weak transcription	Colonic Mucosa	Colon
19	chr11:77584600-77597800	Strong transcription	Primary monocytes fromperipheralblood	blood
20	chr11:77584800-77596400	Strong transcription	Liver	Liver
21	chr11:77584800-77597800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr11:77585000-77596200	Strong transcription	Rectal Mucosa Donor 29	rectum
23	chr11:77585200-77597800	Strong transcription	Fetal Stomach	stomach
24	chr11:77585600-77597600	Strong transcription	Primary T helper cells fromperipheralblood	blood
25	chr11:77586200-77593400	Strong transcription	Left Ventricle	heart
26	chr11:77586200-77594000	Strong transcription	Brain Germinal Matrix	brain
27	chr11:77586200-77595800	Strong transcription	Brain Anterior Caudate	brain
28	chr11:77586200-77595800	Strong transcription	Dnd41	blood
29	chr11:77586200-77596000	Strong transcription	Placenta	Placenta
30	chr11:77586200-77596400	Strong transcription	Fetal Brain Female	brain
31	chr11:77586200-77597600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr11:77586200-77597600	Strong transcription	Lung	lung
33	chr11:77586400-77597800	Strong transcription	Primary T cells fromperipheralblood	blood
34	chr11:77586600-77593800	Strong transcription	Primary neutrophils fromperipheralblood	blood
35	chr11:77586600-77597800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr11:77586600-77597800	Strong transcription	Primary T helper cells PMA-I stimulated	--
37	chr11:77586600-77597800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
38	chr11:77586600-77625000	Weak transcription	Stomach Mucosa	stomach
39	chr11:77586800-77597400	Strong transcription	Cortex derived primary cultured neurospheres	brain
40	chr11:77586800-77597800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
41	chr11:77587200-77595800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
42	chr11:77587200-77617600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
43	chr11:77587400-77593400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
44	chr11:77587400-77597600	Weak transcription	H1 Cell Line	embryonic stem cell
45	chr11:77587600-77597800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
46	chr11:77587800-77603800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
47	chr11:77588000-77595600	Strong transcription	HUES64 Cell Line	embryonic stem cell
48	chr11:77588200-77614000	Weak transcription	Right Ventricle	heart
49	chr11:77588800-77595800	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
50	chr11:77589200-77596000	Strong transcription	Sigmoid Colon	Sigmoid Colon

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