Variant report

Variant	rs1986474
Chromosome Location	chr11:77466334-77466335
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:77461975..77464092-chr11:77464635..77466479,2	MCF-7	breast:
2	chr11:77465455..77468015-chr11:77473324..77476058,2	K562	blood:

Variant related genes	Relation type
ENSG00000048649	Chromatin interaction

Extended variants
information (count: 277 )
Associated
traits (count: 10 )

rSNPs within LD-proxies of this variant (count:270)

rs_ID	r²[population]
rs10676933	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11237234	0.91[EUR][1000 genomes]
rs11237271	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.92[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11237274	0.80[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11822592	0.91[EUR][1000 genomes]
rs11823751	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11824150	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11825573	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11827357	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11828664	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12417215	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[EUR][1000 genomes]
rs12417232	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12417488	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12417760	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12417823	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12418152	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12418261	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.84[EUR][1000 genomes]
rs12418476	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12418551	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12418559	1.00[CEU][hapmap];0.81[CHB][hapmap];0.84[JPT][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12418734	0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];0.92[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12418844	0.81[CEU][hapmap];0.84[CHB][hapmap];0.81[JPT][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12419685	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12420021	0.84[EUR][1000 genomes]
rs12420092	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12420290	0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12420401	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12421391	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12421695	0.84[EUR][1000 genomes]
rs12421699	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12574507	0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12574660	0.84[EUR][1000 genomes]
rs12574999	0.91[EUR][1000 genomes]
rs12575014	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12575150	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12575763	0.83[EUR][1000 genomes]
rs12577552	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes]
rs12806790	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1540179	0.90[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.86[MEX][hapmap];0.92[TSI][hapmap];0.91[EUR][1000 genomes]
rs1544272	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1544273	0.81[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1544274	0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.92[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17135800	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17135807	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.92[JPT][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17135809	0.83[ASW][hapmap];0.81[CEU][hapmap];0.87[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17135811	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17135905	0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17135969	0.83[ASW][hapmap];1.00[CEU][hapmap];0.95[GIH][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.88[EUR][1000 genomes]
rs1892868	1.00[YRI][hapmap]
rs1892869	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1893901	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1945751	0.84[EUR][1000 genomes]
rs2032415	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2051484	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.84[GIH][hapmap];0.92[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2154973	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2154988	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.92[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2156842	0.84[EUR][1000 genomes]
rs2186564	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.95[GIH][hapmap];0.92[JPT][hapmap];0.85[MEX][hapmap];0.85[MKK][hapmap];0.92[TSI][hapmap];1.00[YRI][hapmap];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2186573	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.92[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2187547	0.84[EUR][1000 genomes]
rs2276415	0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.84[EUR][1000 genomes]
rs2276416	0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap];0.84[EUR][1000 genomes]
rs2298820	0.81[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28421376	0.91[EUR][1000 genomes]
rs28610388	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28730304	0.91[EUR][1000 genomes]
rs28930682	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];0.92[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34446294	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35546645	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35774637	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3758664	0.80[EUR][1000 genomes]
rs3781616	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[EUR][1000 genomes]
rs3781617	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3819211	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3886195	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3949117	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4245454	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4245455	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4269952	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4399350	0.84[EUR][1000 genomes]
rs4448713	0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4491258	0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4531493	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.92[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4553396	0.81[EUR][1000 genomes]
rs4578411	0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4606503	0.81[EUR][1000 genomes]
rs4944169	0.93[EUR][1000 genomes]
rs4944170	0.91[EUR][1000 genomes]
rs4944171	0.93[EUR][1000 genomes]
rs4944173	0.93[EUR][1000 genomes]
rs4944175	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4944176	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.92[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4944178	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.95[GIH][hapmap];0.86[JPT][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4945183	0.82[EUR][1000 genomes]
rs4945186	0.87[EUR][1000 genomes]
rs4945187	0.93[EUR][1000 genomes]
rs4945189	0.91[EUR][1000 genomes]
rs4945190	0.91[EUR][1000 genomes]
rs4945191	0.90[CEU][hapmap];1.00[CHB][hapmap];0.91[EUR][1000 genomes]
rs4945192	0.93[EUR][1000 genomes]
rs4945197	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];0.92[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4945202	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4945203	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.92[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4945204	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.92[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4945205	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.92[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4945209	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4945210	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4945211	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4945212	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4945213	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4945214	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4945215	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4945217	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4945218	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4945219	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4945223	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55881536	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56097222	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56175172	0.84[EUR][1000 genomes]
rs56372481	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56817084	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57222975	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57332020	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57362996	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57588070	0.84[EUR][1000 genomes]
rs57687790	0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57805854	0.93[EUR][1000 genomes]
rs57935035	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58020660	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs58367448	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58393579	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58395847	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58608947	0.93[EUR][1000 genomes]
rs58720932	0.93[EUR][1000 genomes]
rs58914857	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59191974	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59239088	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs59404463	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59459776	0.91[EUR][1000 genomes]
rs59520338	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs59581090	0.83[EUR][1000 genomes]
rs59765258	0.93[EUR][1000 genomes]
rs59832115	0.91[EUR][1000 genomes]
rs59969402	0.93[EUR][1000 genomes]
rs59983642	0.84[EUR][1000 genomes]
rs60132034	0.93[EUR][1000 genomes]
rs60186049	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60208812	0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60842160	0.84[EUR][1000 genomes]
rs60849458	0.84[EUR][1000 genomes]
rs608539	0.81[CHB][hapmap]
rs60929773	0.93[EUR][1000 genomes]
rs60948958	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61201484	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61358482	0.91[EUR][1000 genomes]
rs61361232	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61397357	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61468764	0.91[EUR][1000 genomes]
rs61576111	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61605540	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6592736	0.88[EUR][1000 genomes]
rs6592740	0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6592742	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];0.92[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs66472445	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs66488360	0.93[EUR][1000 genomes]
rs66504136	0.93[EUR][1000 genomes]
rs66622455	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs66658383	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs66664368	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs66675536	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs66681087	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs66684353	0.93[EUR][1000 genomes]
rs667213	0.81[CHB][hapmap]
rs66738005	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs66895426	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs66924979	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs66991096	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs67035387	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs67062156	0.83[EUR][1000 genomes]
rs67195676	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67200285	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67230007	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67241586	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67291795	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs67313689	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs67555375	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs67606281	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67680371	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs67724005	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs67736392	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs67769372	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs67775318	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs67807487	0.91[EUR][1000 genomes]
rs67843465	0.84[EUR][1000 genomes]
rs67875187	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67881763	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs68013767	0.93[EUR][1000 genomes]
rs68052959	0.84[EUR][1000 genomes]
rs68146267	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7104540	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7105526	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7106113	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7106659	0.87[EUR][1000 genomes]
rs7109199	0.80[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7109398	0.91[EUR][1000 genomes]
rs7109527	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes]
rs7109704	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7110322	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7110844	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7113415	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7116671	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.92[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7118516	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];0.92[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7119471	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.92[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7119665	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7119934	0.82[EUR][1000 genomes]
rs7120465	0.85[CHB][hapmap];0.91[JPT][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7123204	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7124030	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7124116	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7124753	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7126909	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7127803	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.92[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7128881	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[EUR][1000 genomes]
rs713083	0.91[EUR][1000 genomes]
rs7131169	0.90[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.93[MEX][hapmap];0.92[TSI][hapmap];0.91[EUR][1000 genomes]
rs7131298	0.90[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.93[MEX][hapmap];0.92[TSI][hapmap];0.91[EUR][1000 genomes]
rs720383	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.92[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72931818	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72931829	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72935512	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72939439	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72939448	0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72939452	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72939456	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72943487	0.81[EUR][1000 genomes]
rs72943494	0.82[EUR][1000 genomes]
rs72943497	0.82[EUR][1000 genomes]
rs72945524	0.84[EUR][1000 genomes]
rs72945566	0.93[EUR][1000 genomes]
rs72945586	0.93[EUR][1000 genomes]
rs72947606	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72947636	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72947653	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72949614	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72949656	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73491984	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73495923	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7482006	0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7925252	0.81[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.93[MEX][hapmap];0.92[TSI][hapmap];0.90[EUR][1000 genomes]
rs7930066	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7930885	0.93[EUR][1000 genomes]
rs7930988	0.91[EUR][1000 genomes]
rs7931215	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7932057	0.81[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7932111	0.82[EUR][1000 genomes]
rs7933197	0.82[EUR][1000 genomes]
rs7935050	0.80[YRI][hapmap]
rs7936904	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7937983	0.81[CEU][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7939623	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];0.92[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7941418	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7942838	0.88[EUR][1000 genomes]
rs7946876	0.82[ASW][hapmap];0.86[GIH][hapmap];0.86[MEX][hapmap];0.85[YRI][hapmap]
rs7947430	0.84[EUR][1000 genomes]
rs7947859	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7950612	0.81[EUR][1000 genomes]
rs7950631	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];0.92[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7951172	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9667816	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9667819	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049603	chr11:76900813-77520411	Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv541090	chr11:76900813-77520411	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv1050891	chr11:77416645-77788002	Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	nsv1037292	chr11:77431583-77745934	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
5	nsv541092	chr11:77431583-77745934	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
6	nsv949316	chr11:77454076-77769885	Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
7	nsv976491	chr11:77459085-77487555	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:10)

SNP	Gene	Cis/trans	Tissue	Source
rs1986474	RP11-91P24.6	cis	Artery Tibial	GTEx
rs1986474	AAMDC	cis	Artery Tibial	GTEx
rs1986474	CLNS1A	cis	cerebellum	SCAN
rs1986474	AAMDC	cis	Thyroid	GTEx
rs1986474	RP11-91P24.7	cis	Thyroid	GTEx
rs1986474	RP11-91P24.6	cis	Thyroid	GTEx
rs1986474	INTS4	Cis_1M	lymphoblastoid	RTeQTL
rs1986474	KCTD21	cis	parietal	SCAN
rs1986474	RP11-91P24.7	cis	Artery Tibial	GTEx
rs1986474	RSF1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:77409600-77478200	Weak transcription	Brain Angular Gyrus	brain
2	chr11:77410400-77477600	Weak transcription	Brain Substantia Nigra	brain
3	chr11:77431600-77482400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr11:77436200-77473400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr11:77436200-77477000	Weak transcription	Colonic Mucosa	Colon
6	chr11:77436600-77473200	Weak transcription	NHDF-Ad	bronchial
7	chr11:77442400-77472600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr11:77442800-77474600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr11:77442800-77500200	Weak transcription	Pancreas	Pancrea
10	chr11:77443200-77473600	Weak transcription	Fetal Brain Female	brain
11	chr11:77443200-77500200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr11:77445800-77476800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr11:77446200-77467200	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr11:77446200-77482400	Weak transcription	Spleen	Spleen
15	chr11:77446400-77474800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr11:77448800-77473200	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr11:77449800-77474600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr11:77450600-77474600	Weak transcription	Brain Hippocampus Middle	brain
19	chr11:77452000-77479400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
20	chr11:77452200-77473400	Weak transcription	Hela-S3	cervix
21	chr11:77452200-77481600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
22	chr11:77452600-77474600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
23	chr11:77453200-77473200	Weak transcription	Duodenum Mucosa	Duodenum
24	chr11:77459000-77474600	Weak transcription	NHLF	lung
25	chr11:77459200-77472200	Weak transcription	Liver	Liver
26	chr11:77459200-77473200	Weak transcription	HSMM	muscle
27	chr11:77459200-77473400	Weak transcription	HMEC	breast
28	chr11:77459200-77474400	Weak transcription	NH-A	brain
29	chr11:77459400-77498200	Weak transcription	NHEK	skin
30	chr11:77460000-77495800	Weak transcription	Pancreatic Islets	Pancreatic Islet
31	chr11:77460200-77474600	Weak transcription	HUVEC	blood vessel
32	chr11:77460600-77474600	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr11:77462200-77500200	Weak transcription	Gastric	stomach
34	chr11:77462800-77481200	Weak transcription	Right Ventricle	heart
35	chr11:77463200-77467200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
36	chr11:77463400-77467600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
37	chr11:77463400-77469200	Strong transcription	Primary B cells from peripheral blood	blood
38	chr11:77463600-77477600	Weak transcription	Brain Cingulate Gyrus	brain
39	chr11:77463800-77466600	Weak transcription	Fetal Intestine Small	intestine
40	chr11:77463800-77471200	Strong transcription	Primary T cells fromperipheralblood	blood
41	chr11:77463800-77473200	Weak transcription	Placenta Amnion	Placenta Amnion
42	chr11:77463800-77474600	Weak transcription	Colon Smooth Muscle	Colon
43	chr11:77463800-77527000	Weak transcription	Aorta	Aorta
44	chr11:77464000-77467600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr11:77464000-77474400	Weak transcription	Brain Anterior Caudate	brain
46	chr11:77464000-77474800	Weak transcription	Lung	lung
47	chr11:77464000-77480600	Weak transcription	Fetal Heart	heart
48	chr11:77464200-77466400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chr11:77464200-77473400	Weak transcription	Rectal Smooth Muscle	rectum
50	chr11:77464400-77466400	Strong transcription	Primary T helper cells PMA-I stimulated	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links