Variant report

Variant	rs58914857
Chromosome Location	chr11:77524722-77524723
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:10)
CpG islands
(count:61)
Chromatin interactive
region (count:2)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:10 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	HEY1	chr11:77524717-77524791	HepG2	liver:	n/a	n/a
2	POLR2A	chr11:77524645-77524795	Hela-S3	cervix:	n/a	n/a
3	POLR2A	chr11:77524542-77524858	Hela-S3	cervix:	n/a	n/a
4	POLR2A	chr11:77524688-77524851	MCF-7	breast:	n/a	n/a
5	POLR2A	chr11:77524674-77524808	A549	lung:	n/a	n/a
6	POLR2A	chr11:77524689-77524879	MCF-7	breast:	n/a	n/a
7	POLR2A	chr11:77524611-77524913	GM12878	blood:	n/a	n/a
8	POLR2A	chr11:77524651-77524877	H1-hESC	embryonic stem cell:	n/a	n/a
9	HEY1	chr11:77524652-77524821	K562	blood:	n/a	n/a
10	POLR2A	chr11:77524674-77524726	Hela-S3	cervix:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr11:77524704-77524754	PrEC	prostate:	n/a
2	chr11:77524704-77524754	GM12892	blood:	n/a
3	chr11:77524704-77524754	HCPEpiC	choroid plexus:	n/a
4	chr11:77524704-77524754	NH-A	brain:	n/a
5	chr11:77524704-77524754	PFSK-1	brain:	n/a
6	chr11:77524704-77524754	HNPCEpiC	eye:	n/a
7	chr11:77524704-77524754	RPTEC	kidney:	n/a
8	chr11:77524704-77524754	HCF	heart:	n/a
9	chr11:77524704-77524754	H1-hESC	embryonic stem cell:	embryo
10	chr11:77524704-77524754	Caco-2	colon:	n/a
11	chr11:77524704-77524754	SAEC	small airway:	n/a
12	chr11:77524704-77524754	SKMC	muscle:	n/a
13	chr11:77524704-77524754	HMEC	breast:	n/a
14	chr11:77524704-77524754	AG09309	skin:	n/a
15	chr11:77524704-77524754	A549	lung:	n/a
16	chr11:77524704-77524754	U87	brain:	n/a
17	chr11:77524704-77524754	NB4	blood:	n/a
18	chr11:77524704-77524754	AG04450	lung:	fetal
19	chr11:77524704-77524754	GM19239	blood:	n/a
20	chr11:77524704-77524754	AoSMC	blood vessel:	n/a
21	chr11:77524704-77524754	HEK293	kidney:	embryo
22	chr11:77524704-77524754	SK-N-SH_RA	brain:	n/a
23	chr11:77524704-77524754	MCF10A-Er-Src	breast:	n/a
24	chr11:77524704-77524754	HCT-116	colon:	n/a
25	chr11:77524704-77524754	HepG2	liver:	n/a
26	chr11:77524704-77524754	Jurkat	blood:	n/a
27	chr11:77524704-77524754	AG04449	skin:	fetal
28	chr11:77524704-77524754	T-47D	breast:	n/a
29	chr11:77524704-77524754	Hela-S3	cervix:	n/a
30	chr11:77524704-77524754	HIPEpiC	eye:	n/a
31	chr11:77524704-77524754	HEEpiC	esophagus:	n/a
32	chr11:77524704-77524754	GM12878	blood:	n/a
33	chr11:77524704-77524754	AG09319	gingival:	n/a
34	chr11:77524704-77524754	HL-60	blood:	n/a
35	chr11:77524704-77524754	PANC-1	pancreas:	n/a
36	chr11:77524704-77524754	SK-N-SH	brain:	n/a
37	chr11:77524704-77524754	HAEpiC	amniotic membrane:	n/a
38	chr11:77524704-77524754	GM06990	blood:	n/a
39	chr11:77524704-77524754	HRCEpiC	kidney:	n/a
40	chr11:77524704-77524754	BE2_C	brain:	n/a
41	chr11:77524704-77524754	HRPEpiC	eye:	n/a
42	chr11:77524704-77524754	MCF-7	breast:	n/a
43	chr11:77524704-77524754	SK-N-MC	brain:	n/a
44	chr11:77524704-77524754	ProgFib	skin:	n/a
45	chr11:77524704-77524754	HPAEpiC	pulmonary alveolar:	n/a
46	chr11:77524704-77524754	GM12891	blood:	n/a
47	chr11:77524704-77524754	AG10803	skin:	n/a
48	chr11:77524704-77524754	K562	blood:	n/a
49	chr11:77524704-77524754	NHDF-neo	bronchial:	n/a
50	chr11:77524704-77524754	LNCaP	prostate:	n/a

(count:2 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:77520152..77525474-chr11:77528362..77532820,9	MCF-7	breast:
2	chr11:77523579..77527566-chr11:77528400..77532529,6	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-INTS4-4	chr11:77524365-77524722	NONHSAT023232

No data

Variant related genes	Relation type
ENSG00000219529	TF binding region
ENSG00000219529	CpG island
ENSG00000048649	Chromatin interaction
ENSG00000087884	Chromatin interaction

Extended variants
information (count: 243 )
Associated
traits (count: 8 )

rSNPs within LD-proxies of this variant (count:238)

rs_ID	r²[population]
rs10676933	0.88[EUR][1000 genomes]
rs11237234	0.91[EUR][1000 genomes]
rs11237271	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11237274	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11822592	0.91[EUR][1000 genomes]
rs11823751	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11824150	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11825573	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11827357	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11828664	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12417215	0.84[EUR][1000 genomes]
rs12417232	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12417488	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12417760	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12417823	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12418152	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12418476	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12418551	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12418559	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12418734	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12418844	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12419685	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12420021	0.84[EUR][1000 genomes]
rs12420092	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12420290	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12420401	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12421391	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12421699	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12574507	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12574999	0.91[EUR][1000 genomes]
rs12575014	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12575150	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12577552	0.90[EUR][1000 genomes]
rs12806790	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1540179	0.91[EUR][1000 genomes]
rs1544272	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1544273	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1544274	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17135800	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17135807	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17135809	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17135811	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17135905	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17135969	0.88[EUR][1000 genomes]
rs1892869	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1893901	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1986474	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2032415	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2051484	0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2154973	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2154988	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2186564	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2186573	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2276415	0.84[EUR][1000 genomes]
rs2276416	0.84[EUR][1000 genomes]
rs2298820	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28421376	0.91[EUR][1000 genomes]
rs28610388	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28730304	0.91[EUR][1000 genomes]
rs28930682	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34446294	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35546645	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35774637	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3758664	0.80[EUR][1000 genomes]
rs3781616	0.93[EUR][1000 genomes]
rs3781617	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3819211	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3886195	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3949117	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4245454	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4245455	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4269952	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4448713	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4491258	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4531493	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4578411	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4944169	0.93[EUR][1000 genomes]
rs4944170	0.91[EUR][1000 genomes]
rs4944171	0.93[EUR][1000 genomes]
rs4944173	0.93[EUR][1000 genomes]
rs4944175	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4944176	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4944178	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4945186	0.87[EUR][1000 genomes]
rs4945187	0.93[EUR][1000 genomes]
rs4945189	0.91[EUR][1000 genomes]
rs4945190	0.91[EUR][1000 genomes]
rs4945191	0.91[EUR][1000 genomes]
rs4945192	0.93[EUR][1000 genomes]
rs4945197	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4945202	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4945203	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4945204	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4945205	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4945209	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4945210	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4945211	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4945212	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4945213	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4945214	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4945215	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4945217	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4945218	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4945219	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4945223	0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55881536	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56097222	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56372481	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56817084	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57222975	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57332020	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57362996	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57588070	0.84[EUR][1000 genomes]
rs57687790	0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57805854	0.93[EUR][1000 genomes]
rs57935035	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58020660	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs58367448	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58393579	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58395847	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58608947	0.93[EUR][1000 genomes]
rs58720932	0.93[EUR][1000 genomes]
rs59191974	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59239088	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs59404463	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59459776	0.91[EUR][1000 genomes]
rs59520338	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs59581090	0.83[EUR][1000 genomes]
rs59765258	0.93[EUR][1000 genomes]
rs59832115	0.91[EUR][1000 genomes]
rs59969402	0.93[EUR][1000 genomes]
rs60132034	0.93[EUR][1000 genomes]
rs60186049	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60208812	0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs60929773	0.93[EUR][1000 genomes]
rs60948958	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61201484	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61358482	0.91[EUR][1000 genomes]
rs61361232	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61397357	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61468764	0.91[EUR][1000 genomes]
rs61576111	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61605540	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6592736	0.88[EUR][1000 genomes]
rs6592740	0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6592742	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs66472445	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs66488360	0.93[EUR][1000 genomes]
rs66504136	0.93[EUR][1000 genomes]
rs66622455	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs66658383	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs66664368	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs66675536	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs66681087	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs66684353	0.93[EUR][1000 genomes]
rs66738005	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs66895426	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66924979	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs66991096	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs67035387	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs67195676	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67200285	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67230007	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67241586	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67291795	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs67313689	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs67555375	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs67606281	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs67680371	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs67724005	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs67736392	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs67769372	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs67775318	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs67807487	0.91[EUR][1000 genomes]
rs67875187	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs67881763	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs68013767	0.93[EUR][1000 genomes]
rs68146267	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7104540	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7105526	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7106113	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7106659	0.87[EUR][1000 genomes]
rs7109199	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7109398	0.91[EUR][1000 genomes]
rs7109527	0.93[EUR][1000 genomes]
rs7109704	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7110322	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7110844	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7113415	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7116671	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7118516	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7119471	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7119665	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7120465	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7123204	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7124030	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7124116	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7124753	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7126909	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7127803	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7128881	0.93[EUR][1000 genomes]
rs713083	0.91[EUR][1000 genomes]
rs7131169	0.91[EUR][1000 genomes]
rs7131298	0.91[EUR][1000 genomes]
rs720383	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72931818	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72931829	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72935512	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72939439	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72939448	0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72939452	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72939456	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72945566	0.93[EUR][1000 genomes]
rs72945586	0.93[EUR][1000 genomes]
rs72947606	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72947636	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72947653	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72949614	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72949656	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73491984	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73495923	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7482006	0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7925252	0.90[EUR][1000 genomes]
rs7930066	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7930885	0.93[EUR][1000 genomes]
rs7930988	0.91[EUR][1000 genomes]
rs7931215	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7932057	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7936904	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7937983	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7939623	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7941418	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7942838	0.88[EUR][1000 genomes]
rs7947859	0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7950631	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7951172	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9667816	0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9667819	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050891	chr11:77416645-77788002	Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	nsv1037292	chr11:77431583-77745934	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv541092	chr11:77431583-77745934	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
4	nsv949316	chr11:77454076-77769885	Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
5	nsv975952	chr11:77523566-77526029	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:8)

SNP	Gene	Cis/trans	Tissue	Source
rs58914857	RSF1	Cis_1M	lymphoblastoid	RTeQTL
rs58914857	RP11-91P24.6	cis	Artery Tibial	GTEx
rs58914857	AAMDC	cis	Artery Tibial	GTEx
rs58914857	RP11-91P24.7	cis	Artery Tibial	GTEx
rs58914857	AAMDC	cis	Thyroid	GTEx
rs58914857	RP11-91P24.6	cis	Thyroid	GTEx
rs58914857	INTS4	Cis_1M	lymphoblastoid	RTeQTL
rs58914857	RP11-91P24.7	cis	Thyroid	GTEx

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:77463800-77527000	Weak transcription	Aorta	Aorta
2	chr11:77475200-77527800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr11:77475400-77529000	Weak transcription	NHLF	lung
4	chr11:77475400-77530000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr11:77482800-77525800	Weak transcription	Fetal Lung	lung
6	chr11:77495800-77528200	Weak transcription	Brain Cingulate Gyrus	brain
7	chr11:77496000-77530200	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr11:77499000-77525600	Weak transcription	HMEC	breast
9	chr11:77501200-77525800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr11:77501400-77526800	Weak transcription	Rectal Smooth Muscle	rectum
11	chr11:77503400-77525800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr11:77503600-77525000	Weak transcription	Ovary	ovary
13	chr11:77503600-77529600	Weak transcription	Right Ventricle	heart
14	chr11:77503800-77525800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr11:77504800-77525200	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr11:77505000-77528400	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr11:77505400-77525800	Weak transcription	Primary hematopoietic stem cells	blood
18	chr11:77506800-77528200	Weak transcription	Brain Hippocampus Middle	brain
19	chr11:77508000-77527800	Weak transcription	Colon Smooth Muscle	Colon
20	chr11:77509400-77528800	Weak transcription	Brain Germinal Matrix	brain
21	chr11:77509800-77530000	Weak transcription	NH-A	brain
22	chr11:77511400-77526000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr11:77512000-77524800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr11:77512000-77525800	Weak transcription	NHDF-Ad	bronchial
25	chr11:77512000-77529600	Weak transcription	Stomach Smooth Muscle	stomach
26	chr11:77512200-77529200	Weak transcription	Fetal Brain Female	brain
27	chr11:77512400-77525400	Weak transcription	Psoas Muscle	Psoas
28	chr11:77512400-77530200	Weak transcription	Esophagus	oesophagus
29	chr11:77512400-77530600	Weak transcription	Lung	lung
30	chr11:77512600-77527000	Weak transcription	Skeletal Muscle Female	skeletal muscle
31	chr11:77512600-77530600	Weak transcription	Spleen	Spleen
32	chr11:77512800-77529800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
33	chr11:77512800-77530400	Weak transcription	Gastric	stomach
34	chr11:77513200-77529400	Weak transcription	Small Intestine	intestine
35	chr11:77514400-77526000	Weak transcription	NHEK	skin
36	chr11:77515400-77530000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr11:77516600-77530200	Weak transcription	HSMM	muscle
38	chr11:77517200-77529200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr11:77518400-77527000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
40	chr11:77518400-77528400	Weak transcription	Osteobl	bone
41	chr11:77518400-77529200	Weak transcription	Muscle Satellite Cultured Cells	--
42	chr11:77518600-77525400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
43	chr11:77518600-77525800	Weak transcription	Duodenum Smooth Muscle	Duodenum
44	chr11:77518600-77530000	Weak transcription	Brain Substantia Nigra	brain
45	chr11:77518800-77525000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr11:77518800-77526400	Weak transcription	Brain Angular Gyrus	brain
47	chr11:77518800-77530000	Weak transcription	Colonic Mucosa	Colon
48	chr11:77519000-77527200	Weak transcription	HepG2	liver
49	chr11:77519000-77529400	Weak transcription	HUVEC	blood vessel
50	chr11:77519000-77530000	Weak transcription	Stomach Mucosa	stomach

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