Variant report

Variant	rs17135809
Chromosome Location	chr11:77395697-77395698
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:77393190..77396139-chr11:77472455..77474265,2	K562	blood:
2	chr11:77394060..77396749-chr11:77727760..77729718,2	K562	blood:
3	chr11:77388095..77392294-chr11:77393769..77397595,5	K562	blood:

Variant related genes	Relation type
ENSG00000048649	Chromatin interaction

Extended variants
information (count: 276 )
Associated
traits (count: 10 )

rSNPs within LD-proxies of this variant (count:267)

rs_ID	r²[population]
rs10676933	0.88[EUR][1000 genomes]
rs11237234	0.91[EUR][1000 genomes]
rs11237271	0.81[CEU][hapmap];0.87[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11237274	0.87[CHB][hapmap];0.85[JPT][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11822592	0.91[EUR][1000 genomes]
rs11823751	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11824150	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11825573	0.81[CEU][hapmap];0.87[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11827357	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11828664	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12417215	0.81[CEU][hapmap];0.87[CHB][hapmap];0.84[EUR][1000 genomes]
rs12417232	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12417488	0.81[CEU][hapmap];0.87[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12417760	0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12417823	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12418152	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12418261	0.83[ASW][hapmap];0.81[CEU][hapmap];0.87[CHB][hapmap];0.93[CHD][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.84[EUR][1000 genomes]
rs12418476	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12418551	0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12418559	0.81[CEU][hapmap];0.81[CHB][hapmap];0.92[YRI][hapmap];0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12418734	1.00[ASW][hapmap];0.81[CEU][hapmap];0.87[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];0.85[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12418844	0.81[CEU][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12419685	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12420021	0.84[EUR][1000 genomes]
rs12420092	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12420290	0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12420401	0.81[CEU][hapmap];0.87[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12421391	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12421695	0.84[EUR][1000 genomes]
rs12421699	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12574507	0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12574660	0.84[EUR][1000 genomes]
rs12574999	0.91[EUR][1000 genomes]
rs12575014	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12575150	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12575763	0.83[EUR][1000 genomes]
rs12577552	0.81[CEU][hapmap];0.87[CHB][hapmap];0.90[CHD][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes]
rs12806790	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1540179	0.81[CEU][hapmap];0.87[CHB][hapmap];0.96[CHD][hapmap];0.86[MEX][hapmap];0.92[TSI][hapmap];0.91[EUR][1000 genomes]
rs1544272	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1544273	0.81[CEU][hapmap];0.87[CHB][hapmap];0.85[JPT][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1544274	0.83[ASW][hapmap];0.81[CEU][hapmap];0.87[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17135800	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17135807	0.81[CEU][hapmap];0.87[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17135811	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17135905	0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17135969	0.88[EUR][1000 genomes]
rs1892868	0.92[YRI][hapmap]
rs1892869	0.81[CEU][hapmap];0.87[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1893901	0.81[CEU][hapmap];0.87[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1945751	0.84[EUR][1000 genomes]
rs1986474	0.83[ASW][hapmap];0.81[CEU][hapmap];0.87[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2032415	0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2051484	0.81[CEU][hapmap];0.87[CHB][hapmap];0.96[CHD][hapmap];0.90[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2154973	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2154988	0.81[CEU][hapmap];0.87[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2156842	0.84[EUR][1000 genomes]
rs2186564	0.81[CEU][hapmap];0.87[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];0.85[MEX][hapmap];0.82[MKK][hapmap];0.92[TSI][hapmap];0.92[YRI][hapmap];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2186573	0.81[CEU][hapmap];0.87[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2187547	0.84[EUR][1000 genomes]
rs2276415	1.00[ASW][hapmap];0.81[CEU][hapmap];0.87[CHB][hapmap];0.93[CHD][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.84[EUR][1000 genomes]
rs2276416	1.00[ASW][hapmap];0.81[CEU][hapmap];0.87[CHB][hapmap];0.93[CHD][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.84[YRI][hapmap];0.84[EUR][1000 genomes]
rs2298820	0.81[CEU][hapmap];0.87[CHB][hapmap];0.85[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28421376	0.91[EUR][1000 genomes]
rs28610388	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28730304	0.91[EUR][1000 genomes]
rs28930682	0.81[CEU][hapmap];0.87[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];0.85[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34446294	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35546645	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35774637	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3781616	0.81[CEU][hapmap];0.87[CHB][hapmap];0.93[EUR][1000 genomes]
rs3781617	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3819211	0.83[ASW][hapmap];0.81[CEU][hapmap];0.87[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3886195	0.81[CEU][hapmap];0.87[CHB][hapmap];0.92[YRI][hapmap];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3949117	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4245454	0.96[EUR][1000 genomes]
rs4245455	0.94[EUR][1000 genomes]
rs4269952	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4399350	0.84[EUR][1000 genomes]
rs4448713	0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4491258	0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4531493	0.81[CEU][hapmap];0.87[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4553396	0.81[EUR][1000 genomes]
rs4578411	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4606503	0.81[EUR][1000 genomes]
rs4944169	0.93[EUR][1000 genomes]
rs4944170	0.91[EUR][1000 genomes]
rs4944171	0.93[EUR][1000 genomes]
rs4944173	0.93[EUR][1000 genomes]
rs4944175	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4944176	0.83[ASW][hapmap];0.81[CEU][hapmap];0.87[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4944178	0.81[CEU][hapmap];0.87[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4945183	0.82[EUR][1000 genomes]
rs4945186	0.87[EUR][1000 genomes]
rs4945187	0.93[EUR][1000 genomes]
rs4945189	0.91[EUR][1000 genomes]
rs4945190	0.91[EUR][1000 genomes]
rs4945191	0.81[CEU][hapmap];0.87[CHB][hapmap];0.91[EUR][1000 genomes]
rs4945192	0.93[EUR][1000 genomes]
rs4945197	0.81[CEU][hapmap];0.87[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];0.85[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4945202	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4945203	0.81[CEU][hapmap];0.87[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4945204	0.81[CEU][hapmap];0.87[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4945205	0.81[CEU][hapmap];0.87[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4945209	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4945210	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4945211	0.81[CEU][hapmap];0.87[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4945212	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4945213	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4945214	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4945215	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4945217	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4945218	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4945219	0.81[CEU][hapmap];0.87[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.84[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4945223	0.81[CEU][hapmap];0.86[CHB][hapmap];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs55881536	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56097222	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56175172	0.84[EUR][1000 genomes]
rs56372481	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56817084	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57222975	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs57332020	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57362996	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57588070	0.84[EUR][1000 genomes]
rs57687790	0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57805854	0.93[EUR][1000 genomes]
rs57935035	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58020660	0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs58367448	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58393579	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58395847	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58608947	0.93[EUR][1000 genomes]
rs58720932	0.93[EUR][1000 genomes]
rs58914857	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs59191974	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs59239088	0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs59404463	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59459776	0.91[EUR][1000 genomes]
rs59520338	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59581090	0.83[EUR][1000 genomes]
rs59765258	0.93[EUR][1000 genomes]
rs59832115	0.91[EUR][1000 genomes]
rs59969402	0.93[EUR][1000 genomes]
rs59983642	0.84[EUR][1000 genomes]
rs60132034	0.93[EUR][1000 genomes]
rs60186049	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs60208812	0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs60567392	0.82[ASN][1000 genomes]
rs60842160	0.84[EUR][1000 genomes]
rs60849458	0.84[EUR][1000 genomes]
rs60929773	0.93[EUR][1000 genomes]
rs60948958	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61201484	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61358482	0.91[EUR][1000 genomes]
rs61361232	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61397357	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61468764	0.91[EUR][1000 genomes]
rs61576111	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61605540	0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6592736	0.88[EUR][1000 genomes]
rs6592740	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6592742	0.81[CEU][hapmap];0.87[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];0.85[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs66472445	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66488360	0.93[EUR][1000 genomes]
rs66504136	0.93[EUR][1000 genomes]
rs66622455	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs66658383	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs66664368	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs66675536	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs66681087	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66684353	0.93[EUR][1000 genomes]
rs66738005	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66895426	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs66924979	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs66991096	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67035387	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67062156	0.83[EUR][1000 genomes]
rs67195676	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67200285	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs67230007	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs67241586	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs67291795	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67313689	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67555375	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67606281	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs67680371	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67724005	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs67736392	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs67769372	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs67775318	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67807487	0.91[EUR][1000 genomes]
rs67843465	0.84[EUR][1000 genomes]
rs67875187	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs67881763	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs68013767	0.93[EUR][1000 genomes]
rs68052959	0.84[EUR][1000 genomes]
rs68146267	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7104540	0.81[CEU][hapmap];0.86[CHB][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7105526	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7106113	0.81[CEU][hapmap];0.87[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7106659	0.87[EUR][1000 genomes]
rs7109199	0.87[CHB][hapmap];0.85[JPT][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7109398	0.91[EUR][1000 genomes]
rs7109527	0.81[CEU][hapmap];0.87[CHB][hapmap];0.96[CHD][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes]
rs7109704	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7110322	0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7110844	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7113415	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7113891	0.80[AFR][1000 genomes]
rs7116671	0.81[CEU][hapmap];0.87[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7118516	0.81[CEU][hapmap];0.87[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];0.85[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7119471	0.81[CEU][hapmap];0.87[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7119665	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7119934	0.82[EUR][1000 genomes]
rs7120465	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7123204	0.81[CEU][hapmap];0.87[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7124030	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7124116	0.81[CEU][hapmap];0.86[CHB][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7124753	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7126909	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7127803	0.81[CEU][hapmap];0.87[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7128881	0.81[CEU][hapmap];0.87[CHB][hapmap];0.93[EUR][1000 genomes]
rs713083	0.91[EUR][1000 genomes]
rs7131169	0.81[CEU][hapmap];0.87[CHB][hapmap];0.96[CHD][hapmap];0.93[MEX][hapmap];0.92[TSI][hapmap];0.91[EUR][1000 genomes]
rs7131298	0.81[CEU][hapmap];0.87[CHB][hapmap];0.96[CHD][hapmap];0.93[MEX][hapmap];0.92[TSI][hapmap];0.91[EUR][1000 genomes]
rs720383	0.81[CEU][hapmap];0.87[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72931818	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72931829	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72935512	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72939439	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72939448	0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72939452	0.94[EUR][1000 genomes]
rs72939456	0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72943487	0.81[EUR][1000 genomes]
rs72943494	0.82[EUR][1000 genomes]
rs72943497	0.82[EUR][1000 genomes]
rs72945524	0.84[EUR][1000 genomes]
rs72945566	0.93[EUR][1000 genomes]
rs72945586	0.93[EUR][1000 genomes]
rs72947606	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72947636	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72947653	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72949614	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72949656	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73491984	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73495923	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7482006	0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7925252	0.81[CEU][hapmap];0.87[CHB][hapmap];0.96[CHD][hapmap];0.93[MEX][hapmap];0.92[TSI][hapmap];0.90[EUR][1000 genomes]
rs7930066	0.81[CEU][hapmap];0.87[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7930885	0.93[EUR][1000 genomes]
rs7930988	0.91[EUR][1000 genomes]
rs7931215	0.81[CEU][hapmap];0.87[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7932057	0.81[CEU][hapmap];0.87[CHB][hapmap];0.85[JPT][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7932111	0.82[EUR][1000 genomes]
rs7933197	0.82[EUR][1000 genomes]
rs7936904	0.81[CEU][hapmap];0.87[CHB][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7937983	0.81[CEU][hapmap];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7939623	0.81[CEU][hapmap];0.87[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];0.85[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7941418	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7942838	0.88[EUR][1000 genomes]
rs7947430	0.84[EUR][1000 genomes]
rs7947859	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7950612	0.81[EUR][1000 genomes]
rs7950631	0.81[CEU][hapmap];0.87[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];0.85[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7951172	0.81[CEU][hapmap];0.87[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9667816	0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9667819	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049603	chr11:76900813-77520411	Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv541090	chr11:76900813-77520411	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv1038974	chr11:77284036-77431228	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv1041384	chr11:77284558-77419809	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	nsv1048892	chr11:77290458-77431228	Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
6	nsv1053074	chr11:77290458-77435831	Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
7	nsv468641	chr11:77301341-77420314	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
8	nsv555452	chr11:77301341-77420314	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
9	nsv1035494	chr11:77309696-77431228	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

mRNA abundance (count:10)

SNP	Gene	Cis/trans	Tissue	Source
rs17135809	CLNS1A	cis	cerebellum	SCAN
rs17135809	AAMDC	cis	Artery Tibial	GTEx
rs17135809	RSF1	Cis_1M	lymphoblastoid	RTeQTL
rs17135809	C11orf67	cis	normal skin	skin_eQTL
rs17135809	INTS4	Cis_1M	lymphoblastoid	RTeQTL
rs17135809	RP11-91P24.7	cis	Thyroid	GTEx
rs17135809	AAMDC	cis	Thyroid	GTEx
rs17135809	RP11-91P24.7	cis	Artery Tibial	GTEx
rs17135809	RP11-91P24.6	cis	Thyroid	GTEx
rs17135809	RP11-91P24.6	cis	Artery Tibial	GTEx

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:77360400-77419200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:77370000-77410400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr11:77373800-77413600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr11:77374000-77416200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr11:77374200-77417400	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr11:77374800-77414000	Strong transcription	Fetal Thymus	thymus
7	chr11:77375000-77411200	Strong transcription	Primary T helper cells fromperipheralblood	blood
8	chr11:77375000-77411200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr11:77375000-77413000	Strong transcription	Primary monocytes fromperipheralblood	blood
10	chr11:77375200-77411000	Strong transcription	HUES64 Cell Line	embryonic stem cell
11	chr11:77375200-77411000	Strong transcription	Liver	Liver
12	chr11:77375200-77413600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr11:77375400-77396400	Strong transcription	Primary hematopoietic stem cells	blood
14	chr11:77375400-77404800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr11:77375400-77411000	Strong transcription	Dnd41	blood
16	chr11:77375600-77395800	Strong transcription	Duodenum Smooth Muscle	Duodenum
17	chr11:77375600-77405000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr11:77375600-77411200	Strong transcription	HUES48 Cell Line	embryonic stem cell
19	chr11:77375600-77413200	Strong transcription	Primary T cells fromperipheralblood	blood
20	chr11:77375600-77413400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr11:77375800-77404800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr11:77376800-77415600	Strong transcription	Primary B cells from peripheral blood	blood
23	chr11:77377600-77410400	Strong transcription	HUES6 Cell Line	embryonic stem cell
24	chr11:77378000-77397800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr11:77381400-77403000	Weak transcription	Aorta	Aorta
26	chr11:77381800-77396200	Weak transcription	Pancreatic Islets	Pancreatic Islet
27	chr11:77381800-77411000	Weak transcription	Stomach Mucosa	stomach
28	chr11:77382000-77409000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr11:77384200-77400200	Weak transcription	Right Ventricle	heart
30	chr11:77384200-77411200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr11:77385400-77404800	Strong transcription	Osteobl	bone
32	chr11:77386400-77414000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr11:77387200-77416600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
34	chr11:77387400-77405800	Weak transcription	K562	blood
35	chr11:77388000-77408000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
36	chr11:77388000-77408000	Weak transcription	Colonic Mucosa	Colon
37	chr11:77388000-77413400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr11:77388000-77413600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr11:77388600-77415800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr11:77388800-77409800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr11:77389000-77395800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
42	chr11:77389200-77399600	Weak transcription	Brain Germinal Matrix	brain
43	chr11:77389200-77404800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
44	chr11:77389200-77406400	Weak transcription	HMEC	breast
45	chr11:77389400-77413400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr11:77389800-77435400	Weak transcription	Psoas Muscle	Psoas
47	chr11:77390000-77402000	Weak transcription	A549	lung
48	chr11:77390000-77408800	Weak transcription	NHLF	lung
49	chr11:77390200-77397200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr11:77390600-77409800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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Variant report

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