Variant report

Variant	rs61576111
Chromosome Location	chr11:77516236-77516237
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:77515186..77517224-chr11:77704875..77706817,2	MCF-7	breast:
2	chr11:77515983..77518515-chr11:77527821..77530386,2	K562	blood:

Variant related genes	Relation type
ENSG00000149262	Chromatin interaction

Extended variants
information (count: 253 )
Associated
traits (count: 10 )

rSNPs within LD-proxies of this variant (count:247)

rs_ID	r²[population]
rs10676933	0.88[EUR][1000 genomes]
rs11237234	0.91[EUR][1000 genomes]
rs11237271	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11237274	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11822592	0.91[EUR][1000 genomes]
rs11823751	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11824150	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11825573	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11827357	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11828664	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12417215	0.84[EUR][1000 genomes]
rs12417232	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12417488	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12417760	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12417823	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12418152	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12418476	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12418551	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12418559	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12418734	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12418844	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12419685	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12420021	0.84[EUR][1000 genomes]
rs12420092	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12420290	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12420401	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12421391	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12421695	0.84[EUR][1000 genomes]
rs12421699	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12574507	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12574660	0.84[EUR][1000 genomes]
rs12574999	0.91[EUR][1000 genomes]
rs12575014	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12575150	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12575763	0.83[EUR][1000 genomes]
rs12577552	0.90[EUR][1000 genomes]
rs12806790	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1540179	0.91[EUR][1000 genomes]
rs1544272	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1544273	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1544274	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17135800	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17135807	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17135809	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17135811	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17135905	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17135969	0.88[EUR][1000 genomes]
rs1892869	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1893901	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1986474	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2032415	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2051484	0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2154973	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2154988	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2186564	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2186573	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2276415	0.84[EUR][1000 genomes]
rs2276416	0.84[EUR][1000 genomes]
rs2298820	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28421376	0.91[EUR][1000 genomes]
rs28610388	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28730304	0.91[EUR][1000 genomes]
rs28930682	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34446294	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35546645	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35774637	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3758664	0.80[EUR][1000 genomes]
rs3781616	0.93[EUR][1000 genomes]
rs3781617	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3819211	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3886195	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3949117	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4245454	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4245455	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4269952	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4448713	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4491258	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4531493	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4578411	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4606503	0.81[EUR][1000 genomes]
rs4944169	0.93[EUR][1000 genomes]
rs4944170	0.91[EUR][1000 genomes]
rs4944171	0.93[EUR][1000 genomes]
rs4944173	0.93[EUR][1000 genomes]
rs4944175	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4944176	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4944178	0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4945186	0.87[EUR][1000 genomes]
rs4945187	0.93[EUR][1000 genomes]
rs4945189	0.91[EUR][1000 genomes]
rs4945190	0.91[EUR][1000 genomes]
rs4945191	0.91[EUR][1000 genomes]
rs4945192	0.93[EUR][1000 genomes]
rs4945197	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4945202	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4945203	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4945204	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4945205	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4945209	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4945210	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4945211	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4945212	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4945213	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4945214	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4945215	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4945217	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4945218	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4945219	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4945223	0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55881536	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56097222	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56372481	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56817084	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57222975	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57332020	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57362996	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57588070	0.84[EUR][1000 genomes]
rs57687790	0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57805854	0.93[EUR][1000 genomes]
rs57935035	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58020660	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs58367448	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58393579	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58395847	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58608947	0.93[EUR][1000 genomes]
rs58720932	0.93[EUR][1000 genomes]
rs58914857	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59191974	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59239088	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs59404463	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59459776	0.91[EUR][1000 genomes]
rs59520338	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs59581090	0.83[EUR][1000 genomes]
rs59765258	0.93[EUR][1000 genomes]
rs59832115	0.91[EUR][1000 genomes]
rs59969402	0.93[EUR][1000 genomes]
rs59983642	0.84[EUR][1000 genomes]
rs60132034	0.93[EUR][1000 genomes]
rs60186049	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60208812	0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs60849458	0.84[EUR][1000 genomes]
rs60929773	0.93[EUR][1000 genomes]
rs60948958	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61201484	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61358482	0.91[EUR][1000 genomes]
rs61361232	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61397357	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61468764	0.91[EUR][1000 genomes]
rs61605540	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6592736	0.88[EUR][1000 genomes]
rs6592740	0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6592742	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs66472445	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs66488360	0.93[EUR][1000 genomes]
rs66504136	0.93[EUR][1000 genomes]
rs66622455	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs66658383	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs66664368	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs66675536	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs66681087	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs66684353	0.93[EUR][1000 genomes]
rs66738005	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs66895426	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66924979	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs66991096	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs67035387	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs67062156	0.83[EUR][1000 genomes]
rs67195676	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67200285	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67230007	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67241586	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67291795	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs67313689	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs67555375	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs67606281	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs67680371	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs67724005	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs67736392	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs67769372	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs67775318	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs67807487	0.91[EUR][1000 genomes]
rs67843465	0.84[EUR][1000 genomes]
rs67875187	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs67881763	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs68013767	0.93[EUR][1000 genomes]
rs68146267	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7104540	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7105526	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7106113	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7106659	0.87[EUR][1000 genomes]
rs7109199	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7109398	0.91[EUR][1000 genomes]
rs7109527	0.93[EUR][1000 genomes]
rs7109704	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7110322	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7110844	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7113415	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7116671	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7118516	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7119471	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7119665	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7120465	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7123204	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7124030	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7124116	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7124753	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7126909	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7127803	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7128881	0.93[EUR][1000 genomes]
rs713083	0.91[EUR][1000 genomes]
rs7131169	0.91[EUR][1000 genomes]
rs7131298	0.91[EUR][1000 genomes]
rs720383	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72931818	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72931829	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72935512	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72939439	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72939448	0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72939452	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72939456	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72945566	0.93[EUR][1000 genomes]
rs72945586	0.93[EUR][1000 genomes]
rs72947606	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72947636	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72947653	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72949614	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72949656	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73491984	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73495923	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7482006	0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7925252	0.90[EUR][1000 genomes]
rs7930066	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7930885	0.93[EUR][1000 genomes]
rs7930988	0.91[EUR][1000 genomes]
rs7931215	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7932057	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7936904	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7937983	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7939623	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7941418	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7942838	0.88[EUR][1000 genomes]
rs7947430	0.84[EUR][1000 genomes]
rs7947859	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7950631	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7951172	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9667816	0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9667819	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049603	chr11:76900813-77520411	Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv541090	chr11:76900813-77520411	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv1050891	chr11:77416645-77788002	Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	nsv1037292	chr11:77431583-77745934	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
5	nsv541092	chr11:77431583-77745934	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
6	nsv949316	chr11:77454076-77769885	Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

mRNA abundance (count:10)

SNP	Gene	Cis/trans	Tissue	Source
rs61576111	RP11-91P24.7	cis	Thyroid	GTEx
rs61576111	AAMDC	cis	Thyroid	GTEx
rs61576111	RP11-91P24.6	cis	Artery Tibial	GTEx
rs61576111	RP11-91P24.7	cis	Nerve Tibial	GTEx
rs61576111	RP11-91P24.7	cis	Artery Tibial	GTEx
rs61576111	RP11-91P24.6	cis	Thyroid	GTEx
rs61576111	INTS4	Cis_1M	lymphoblastoid	RTeQTL
rs61576111	RP11-91P24.6	cis	Nerve Tibial	GTEx
rs61576111	RSF1	Cis_1M	lymphoblastoid	RTeQTL
rs61576111	AAMDC	cis	Artery Tibial	GTEx

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:77463800-77527000	Weak transcription	Aorta	Aorta
2	chr11:77475200-77527800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr11:77475400-77522000	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr11:77475400-77529000	Weak transcription	NHLF	lung
5	chr11:77475400-77530000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr11:77475800-77522000	Weak transcription	Hela-S3	cervix
7	chr11:77482800-77525800	Weak transcription	Fetal Lung	lung
8	chr11:77487400-77522000	Weak transcription	Placenta	Placenta
9	chr11:77491400-77517600	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr11:77495800-77528200	Weak transcription	Brain Cingulate Gyrus	brain
11	chr11:77496000-77530200	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr11:77499000-77525600	Weak transcription	HMEC	breast
13	chr11:77501200-77525800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr11:77501400-77521600	Weak transcription	Fetal Kidney	kidney
15	chr11:77501400-77526800	Weak transcription	Rectal Smooth Muscle	rectum
16	chr11:77502000-77516800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr11:77503400-77525800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr11:77503600-77525000	Weak transcription	Ovary	ovary
19	chr11:77503600-77529600	Weak transcription	Right Ventricle	heart
20	chr11:77503800-77521200	Weak transcription	Fetal Thymus	thymus
21	chr11:77503800-77525800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr11:77504000-77521800	Weak transcription	HUES64 Cell Line	embryonic stem cell
23	chr11:77504000-77524400	Weak transcription	Fetal Muscle Trunk	muscle
24	chr11:77504800-77524600	Weak transcription	Fetal Intestine Large	intestine
25	chr11:77504800-77525200	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr11:77505000-77518000	Weak transcription	A549	lung
27	chr11:77505000-77522200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr11:77505000-77524000	Weak transcription	Fetal Muscle Leg	muscle
29	chr11:77505000-77528400	Weak transcription	H1 Cell Line	embryonic stem cell
30	chr11:77505200-77521600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
31	chr11:77505200-77524200	Weak transcription	HUES48 Cell Line	embryonic stem cell
32	chr11:77505400-77525800	Weak transcription	Primary hematopoietic stem cells	blood
33	chr11:77505600-77520000	Weak transcription	Primary T cells from cord blood	blood
34	chr11:77505600-77521400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr11:77506800-77516800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
36	chr11:77506800-77528200	Weak transcription	Brain Hippocampus Middle	brain
37	chr11:77508000-77527800	Weak transcription	Colon Smooth Muscle	Colon
38	chr11:77509400-77528800	Weak transcription	Brain Germinal Matrix	brain
39	chr11:77509600-77518200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr11:77509800-77530000	Weak transcription	NH-A	brain
41	chr11:77510000-77521600	Weak transcription	Thymus	Thymus
42	chr11:77510000-77524600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
43	chr11:77510800-77517000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
44	chr11:77510800-77518200	Weak transcription	GM12878-XiMat	blood
45	chr11:77510800-77521200	Weak transcription	Monocytes-CD14+_RO01746	blood
46	chr11:77511200-77520200	Weak transcription	Primary monocytes fromperipheralblood	blood
47	chr11:77511400-77526000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr11:77511800-77516800	Weak transcription	Stomach Mucosa	stomach
49	chr11:77511800-77518600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
50	chr11:77512000-77518200	Weak transcription	K562	blood

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