Variant report

Variant	rs67775318
Chromosome Location	chr11:77415542-77415543
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TEAD4	chr11:77415038-77415578	HepG2	liver:	n/a	n/a
2	ARID3A	chr11:77415224-77415572	HepG2	liver:	n/a	n/a
3	CEBPB	chr11:77415408-77415578	HepG2	liver:	n/a	chr11:77415468-77415479

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:77412276..77415003-chr11:77415368..77418082,2	K562	blood:

Variant related genes	Relation type
RSF1	TF binding region
ENSG00000048649	Chromatin interaction

Extended variants
information (count: 275 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:266)

rs_ID	r²[population]
rs10676933	0.88[EUR][1000 genomes]
rs11237234	0.91[EUR][1000 genomes]
rs11237271	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11237274	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11822592	0.91[EUR][1000 genomes]
rs11823751	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11824150	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11825573	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11827357	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11828664	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12417215	0.84[EUR][1000 genomes]
rs12417232	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12417488	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12417760	0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12417823	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12418152	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12418261	0.84[EUR][1000 genomes]
rs12418476	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12418551	0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12418559	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12418734	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12418844	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12419685	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12420021	0.84[EUR][1000 genomes]
rs12420092	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12420290	0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12420401	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12421391	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12421695	0.84[EUR][1000 genomes]
rs12421699	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12574507	0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12574660	0.84[EUR][1000 genomes]
rs12574999	0.91[EUR][1000 genomes]
rs12575014	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12575150	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12575763	0.83[EUR][1000 genomes]
rs12577552	0.90[EUR][1000 genomes]
rs12806790	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1540179	0.91[EUR][1000 genomes]
rs1544272	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1544273	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1544274	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17135800	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17135807	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17135809	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17135811	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17135905	0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17135969	0.88[EUR][1000 genomes]
rs1892869	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1893901	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1945751	0.84[EUR][1000 genomes]
rs1986474	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2032415	0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2051484	0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2154973	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2154988	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2156842	0.84[EUR][1000 genomes]
rs2186564	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2186573	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2187547	0.84[EUR][1000 genomes]
rs2276415	0.84[EUR][1000 genomes]
rs2276416	0.84[EUR][1000 genomes]
rs2298820	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28421376	0.91[EUR][1000 genomes]
rs28610388	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28730304	0.91[EUR][1000 genomes]
rs28930682	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34446294	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35546645	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35774637	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3758664	0.80[EUR][1000 genomes]
rs3781616	0.93[EUR][1000 genomes]
rs3781617	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3819211	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3886195	0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3949117	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4245454	0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4245455	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4269952	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4399350	0.84[EUR][1000 genomes]
rs4448713	0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4491258	0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4531493	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4553396	0.81[EUR][1000 genomes]
rs4578411	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4606503	0.81[EUR][1000 genomes]
rs4944169	0.93[EUR][1000 genomes]
rs4944170	0.91[EUR][1000 genomes]
rs4944171	0.93[EUR][1000 genomes]
rs4944173	0.93[EUR][1000 genomes]
rs4944175	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4944176	0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4944178	0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4945183	0.82[EUR][1000 genomes]
rs4945186	0.87[EUR][1000 genomes]
rs4945187	0.93[EUR][1000 genomes]
rs4945189	0.91[EUR][1000 genomes]
rs4945190	0.91[EUR][1000 genomes]
rs4945191	0.91[EUR][1000 genomes]
rs4945192	0.93[EUR][1000 genomes]
rs4945197	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4945202	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4945203	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4945204	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4945205	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4945209	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4945210	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4945211	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4945212	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4945213	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4945214	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4945215	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4945217	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4945218	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4945219	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4945223	0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs55881536	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56097222	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56175172	0.84[EUR][1000 genomes]
rs56372481	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56817084	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs57222975	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57332020	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57362996	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57588070	0.84[EUR][1000 genomes]
rs57687790	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57805854	0.93[EUR][1000 genomes]
rs57935035	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58020660	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs58367448	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58393579	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58395847	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58608947	0.93[EUR][1000 genomes]
rs58720932	0.93[EUR][1000 genomes]
rs58914857	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59191974	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59239088	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs59404463	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs59459776	0.91[EUR][1000 genomes]
rs59520338	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59581090	0.83[EUR][1000 genomes]
rs59765258	0.93[EUR][1000 genomes]
rs59832115	0.91[EUR][1000 genomes]
rs59969402	0.93[EUR][1000 genomes]
rs59983642	0.84[EUR][1000 genomes]
rs60132034	0.93[EUR][1000 genomes]
rs60186049	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60208812	0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs60567392	0.80[ASN][1000 genomes]
rs60842160	0.84[EUR][1000 genomes]
rs60849458	0.84[EUR][1000 genomes]
rs60929773	0.93[EUR][1000 genomes]
rs60948958	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61201484	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61358482	0.91[EUR][1000 genomes]
rs61361232	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61397357	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61468764	0.91[EUR][1000 genomes]
rs61576111	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61605540	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6592736	0.88[EUR][1000 genomes]
rs6592740	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6592742	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs66472445	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs66488360	0.93[EUR][1000 genomes]
rs66504136	0.93[EUR][1000 genomes]
rs66622455	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs66658383	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs66664368	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs66675536	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs66681087	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs66684353	0.93[EUR][1000 genomes]
rs66738005	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs66895426	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs66924979	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs66991096	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67035387	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs67062156	0.83[EUR][1000 genomes]
rs67195676	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs67200285	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs67230007	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs67241586	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs67291795	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67313689	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67555375	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67606281	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs67680371	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67724005	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67736392	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs67769372	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67807487	0.91[EUR][1000 genomes]
rs67843465	0.84[EUR][1000 genomes]
rs67875187	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs67881763	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs68013767	0.93[EUR][1000 genomes]
rs68052959	0.84[EUR][1000 genomes]
rs68146267	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7104540	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7105526	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7106113	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7106659	0.87[EUR][1000 genomes]
rs7109199	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7109398	0.91[EUR][1000 genomes]
rs7109527	0.93[EUR][1000 genomes]
rs7109704	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7110322	0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7110844	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7113415	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7116671	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7118516	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7119471	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7119665	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7119934	0.82[EUR][1000 genomes]
rs7120465	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7123204	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7124030	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7124116	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7124753	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7126909	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7127803	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7128881	0.93[EUR][1000 genomes]
rs713083	0.91[EUR][1000 genomes]
rs7131169	0.91[EUR][1000 genomes]
rs7131298	0.91[EUR][1000 genomes]
rs720383	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72931818	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72931829	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72935512	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72939439	0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72939448	0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72939452	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72939456	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72943487	0.81[EUR][1000 genomes]
rs72943494	0.82[EUR][1000 genomes]
rs72943497	0.82[EUR][1000 genomes]
rs72945524	0.84[EUR][1000 genomes]
rs72945566	0.93[EUR][1000 genomes]
rs72945586	0.93[EUR][1000 genomes]
rs72947606	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72947636	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72947653	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72949614	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72949656	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73491984	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73495923	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7482006	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7925252	0.90[EUR][1000 genomes]
rs7930066	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7930885	0.93[EUR][1000 genomes]
rs7930988	0.91[EUR][1000 genomes]
rs7931215	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7932057	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7932111	0.82[EUR][1000 genomes]
rs7933197	0.82[EUR][1000 genomes]
rs7936904	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7937983	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7939623	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7941418	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7942838	0.88[EUR][1000 genomes]
rs7947430	0.84[EUR][1000 genomes]
rs7947859	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7950612	0.81[EUR][1000 genomes]
rs7950631	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7951172	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9667816	0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9667819	0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049603	chr11:76900813-77520411	Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv541090	chr11:76900813-77520411	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv1038974	chr11:77284036-77431228	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv1041384	chr11:77284558-77419809	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	nsv1048892	chr11:77290458-77431228	Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
6	nsv1053074	chr11:77290458-77435831	Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
7	nsv468641	chr11:77301341-77420314	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
8	nsv555452	chr11:77301341-77420314	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
9	nsv1035494	chr11:77309696-77431228	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs67775318	RP11-91P24.6	cis	Artery Tibial	GTEx
rs67775318	AAMDC	cis	Artery Tibial	GTEx
rs67775318	RP11-91P24.7	cis	Artery Tibial	GTEx
rs67775318	RP11-91P24.6	cis	Thyroid	GTEx
rs67775318	AAMDC	cis	Thyroid	GTEx

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:77360400-77419200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:77374000-77416200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr11:77374200-77417400	Strong transcription	Monocytes-CD14+_RO01746	blood
4	chr11:77376800-77415600	Strong transcription	Primary B cells from peripheral blood	blood
5	chr11:77387200-77416600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr11:77388600-77415800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr11:77389800-77435400	Weak transcription	Psoas Muscle	Psoas
8	chr11:77391600-77442000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr11:77394200-77425200	Weak transcription	Lung	lung
10	chr11:77394600-77416600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr11:77394600-77435600	Weak transcription	Gastric	stomach
12	chr11:77394600-77441800	Weak transcription	Spleen	Spleen
13	chr11:77394600-77445600	Weak transcription	Esophagus	oesophagus
14	chr11:77394600-77458800	Weak transcription	Small Intestine	intestine
15	chr11:77394800-77418200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr11:77394800-77462600	Weak transcription	Fetal Heart	heart
17	chr11:77398800-77422400	Weak transcription	Pancreas	Pancrea
18	chr11:77402200-77416800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr11:77402600-77435800	Weak transcription	Brain Cingulate Gyrus	brain
20	chr11:77403200-77442200	Weak transcription	Brain Anterior Caudate	brain
21	chr11:77404600-77441800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr11:77406400-77434600	Weak transcription	Fetal Brain Female	brain
23	chr11:77406800-77428000	Weak transcription	Ovary	ovary
24	chr11:77407200-77448000	Weak transcription	K562	blood
25	chr11:77408400-77434200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr11:77409400-77441600	Weak transcription	Brain Hippocampus Middle	brain
27	chr11:77409600-77415600	Weak transcription	HMEC	breast
28	chr11:77409600-77416400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr11:77409600-77428000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr11:77409600-77432600	Weak transcription	Cortex derived primary cultured neurospheres	brain
31	chr11:77409600-77435200	Weak transcription	Rectal Smooth Muscle	rectum
32	chr11:77409600-77435400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
33	chr11:77409600-77435600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
34	chr11:77409600-77441800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
35	chr11:77409600-77453400	Weak transcription	Placenta Amnion	Placenta Amnion
36	chr11:77409600-77458800	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr11:77409600-77478200	Weak transcription	Brain Angular Gyrus	brain
38	chr11:77409800-77416000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
39	chr11:77409800-77416600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr11:77409800-77416600	Weak transcription	HUVEC	blood vessel
41	chr11:77409800-77419200	Weak transcription	GM12878-XiMat	blood
42	chr11:77409800-77428000	Weak transcription	Placenta	Placenta
43	chr11:77409800-77428000	Weak transcription	Sigmoid Colon	Sigmoid Colon
44	chr11:77409800-77430600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr11:77409800-77432200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
46	chr11:77409800-77434200	Weak transcription	NHLF	lung
47	chr11:77409800-77434600	Weak transcription	Duodenum Mucosa	Duodenum
48	chr11:77409800-77435400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
49	chr11:77409800-77435400	Weak transcription	Skeletal Muscle Male	skeletal muscle
50	chr11:77409800-77435600	Weak transcription	Colonic Mucosa	Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links