Variant report

Variant	rs7109527
Chromosome Location	chr11:77341306-77341307
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:77341252-77341961	SK-N-MC	brain:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:77331741..77334596-chr11:77341231..77343566,3	K562	blood:
2	chr11:77313691..77315656-chr11:77340049..77342941,2	K562	blood:
3	chr11:77335476..77339599-chr11:77339977..77343574,4	K562	blood:
4	chr11:77333094..77338883-chr11:77339867..77344614,9	K562	blood:
5	chr11:77340015..77344722-chr11:77345177..77350367,11	K562	blood:

No data

Variant related genes	Relation type
CLNS1A	TF binding region
ENSG00000074201	Chromatin interaction

Extended variants
information (count: 262 )
Associated
traits (count: 11 )

rSNPs within LD-proxies of this variant (count:251)

rs_ID	r²[population]
rs10676933	0.80[EUR][1000 genomes]
rs11237234	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11237271	0.81[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes]
rs11237274	0.80[CEU][hapmap];1.00[CHB][hapmap];0.93[EUR][1000 genomes]
rs11822592	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11823751	0.93[EUR][1000 genomes]
rs11824150	0.93[EUR][1000 genomes]
rs11825573	0.81[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes]
rs11827357	0.91[EUR][1000 genomes]
rs11828664	0.89[EUR][1000 genomes]
rs12417215	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.96[YRI][hapmap];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12417232	0.93[EUR][1000 genomes]
rs12417488	0.81[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes]
rs12417760	0.91[EUR][1000 genomes]
rs12417823	0.93[EUR][1000 genomes]
rs12418152	0.93[EUR][1000 genomes]
rs12418261	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.96[GIH][hapmap];0.92[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12418476	0.93[EUR][1000 genomes]
rs12418551	0.91[EUR][1000 genomes]
rs12418559	1.00[CEU][hapmap];0.81[CHB][hapmap];0.93[EUR][1000 genomes]
rs12418734	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes]
rs12418844	0.81[CEU][hapmap];0.84[CHB][hapmap];0.93[EUR][1000 genomes]
rs12419186	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12419685	0.93[EUR][1000 genomes]
rs12420021	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12420092	0.88[EUR][1000 genomes]
rs12420290	0.91[EUR][1000 genomes]
rs12420401	0.81[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes]
rs12421391	0.93[EUR][1000 genomes]
rs12421695	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12421699	0.93[EUR][1000 genomes]
rs12574660	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12574999	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12575014	0.93[EUR][1000 genomes]
rs12575150	0.93[EUR][1000 genomes]
rs12575305	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12575763	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12577552	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.96[GIH][hapmap];0.92[JPT][hapmap];0.86[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12806790	0.90[EUR][1000 genomes]
rs1540179	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];0.93[LWK][hapmap];0.93[MEX][hapmap];0.92[TSI][hapmap];0.85[YRI][hapmap];0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1544272	0.93[EUR][1000 genomes]
rs1544273	0.81[CEU][hapmap];1.00[CHB][hapmap];0.93[EUR][1000 genomes]
rs1544274	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes]
rs17135800	0.93[EUR][1000 genomes]
rs17135807	0.81[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes]
rs17135809	0.81[CEU][hapmap];0.87[CHB][hapmap];0.96[CHD][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes]
rs17135811	0.93[EUR][1000 genomes]
rs17135905	0.91[EUR][1000 genomes]
rs1892869	0.81[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes]
rs1893901	0.81[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes]
rs1945751	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1986474	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes]
rs2154973	0.93[EUR][1000 genomes]
rs2154988	0.81[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes]
rs2156842	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2186573	0.81[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes]
rs2187547	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2276415	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.96[GIH][hapmap];0.92[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2276416	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.96[GIH][hapmap];0.92[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2298820	0.81[CEU][hapmap];1.00[CHB][hapmap];0.93[EUR][1000 genomes]
rs28421376	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28610388	0.93[EUR][1000 genomes]
rs28730304	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28930682	0.81[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes]
rs34446294	0.93[EUR][1000 genomes]
rs35546645	0.88[EUR][1000 genomes]
rs35774637	0.93[EUR][1000 genomes]
rs3781616	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.84[YRI][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3781617	0.93[EUR][1000 genomes]
rs3819211	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes]
rs3886195	0.91[EUR][1000 genomes]
rs3949117	0.93[EUR][1000 genomes]
rs4269952	0.91[EUR][1000 genomes]
rs4301811	0.80[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs4399350	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4486654	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4491258	0.91[EUR][1000 genomes]
rs4531493	0.81[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes]
rs4553396	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4578411	0.91[EUR][1000 genomes]
rs4606503	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4944169	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4944170	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4944171	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4944173	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4944175	0.93[EUR][1000 genomes]
rs4944176	0.91[EUR][1000 genomes]
rs4945182	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4945183	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4945186	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4945187	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4945189	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4945190	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4945191	0.90[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.88[YRI][hapmap];0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4945192	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4945197	0.81[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes]
rs4945202	0.93[EUR][1000 genomes]
rs4945203	0.81[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes]
rs4945204	0.81[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes]
rs4945205	0.81[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes]
rs4945209	0.93[EUR][1000 genomes]
rs4945210	0.93[EUR][1000 genomes]
rs4945211	0.81[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes]
rs4945212	0.93[EUR][1000 genomes]
rs4945213	0.93[EUR][1000 genomes]
rs4945214	0.93[EUR][1000 genomes]
rs4945215	0.93[EUR][1000 genomes]
rs4945217	0.88[EUR][1000 genomes]
rs4945218	0.93[EUR][1000 genomes]
rs4945219	0.81[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes]
rs55881536	0.93[EUR][1000 genomes]
rs56097222	0.86[EUR][1000 genomes]
rs56175172	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56372481	0.87[EUR][1000 genomes]
rs56817084	0.93[EUR][1000 genomes]
rs57222975	0.93[EUR][1000 genomes]
rs57332020	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs57362996	0.93[EUR][1000 genomes]
rs57588070	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs57687790	0.91[EUR][1000 genomes]
rs57805854	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57935035	0.93[EUR][1000 genomes]
rs58367448	0.93[EUR][1000 genomes]
rs58393579	0.93[EUR][1000 genomes]
rs58395847	0.93[EUR][1000 genomes]
rs58608947	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58720932	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58914857	0.93[EUR][1000 genomes]
rs59191974	0.93[EUR][1000 genomes]
rs59404463	0.93[EUR][1000 genomes]
rs59459776	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59520338	0.93[EUR][1000 genomes]
rs59581090	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59765258	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs59832115	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59969402	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59983642	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs60132034	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60186049	0.93[EUR][1000 genomes]
rs60842160	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs60849458	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs60929773	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60948958	0.93[EUR][1000 genomes]
rs61201484	0.93[EUR][1000 genomes]
rs61358482	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61361232	0.93[EUR][1000 genomes]
rs61397357	0.93[EUR][1000 genomes]
rs61468764	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61576111	0.93[EUR][1000 genomes]
rs6592736	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6592740	0.91[EUR][1000 genomes]
rs6592742	0.81[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes]
rs66472445	0.93[EUR][1000 genomes]
rs66488360	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66504136	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs66622455	0.93[EUR][1000 genomes]
rs66658383	0.93[EUR][1000 genomes]
rs66664368	0.91[EUR][1000 genomes]
rs66675536	0.93[EUR][1000 genomes]
rs66681087	0.93[EUR][1000 genomes]
rs66684353	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs66738005	0.93[EUR][1000 genomes]
rs66895426	0.93[EUR][1000 genomes]
rs66924979	0.93[EUR][1000 genomes]
rs66991096	0.93[EUR][1000 genomes]
rs67035387	0.93[EUR][1000 genomes]
rs67062156	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs67195676	0.93[EUR][1000 genomes]
rs67200285	0.93[EUR][1000 genomes]
rs67230007	0.93[EUR][1000 genomes]
rs67241586	0.93[EUR][1000 genomes]
rs67291795	0.93[EUR][1000 genomes]
rs67313689	0.93[EUR][1000 genomes]
rs67555375	0.93[EUR][1000 genomes]
rs67606281	0.93[EUR][1000 genomes]
rs67680371	0.93[EUR][1000 genomes]
rs67724005	0.93[EUR][1000 genomes]
rs67736392	0.93[EUR][1000 genomes]
rs67769372	0.93[EUR][1000 genomes]
rs67775318	0.93[EUR][1000 genomes]
rs67807487	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67843465	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs67875187	0.93[EUR][1000 genomes]
rs67881763	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs68013767	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs68052959	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs68146267	0.93[EUR][1000 genomes]
rs7104540	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[EUR][1000 genomes]
rs7105526	0.93[EUR][1000 genomes]
rs7106113	0.81[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes]
rs7106659	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7109199	0.80[CEU][hapmap];1.00[CHB][hapmap];0.93[EUR][1000 genomes]
rs7109398	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7109704	0.93[EUR][1000 genomes]
rs7110322	0.91[EUR][1000 genomes]
rs7110844	0.93[EUR][1000 genomes]
rs7113415	0.93[EUR][1000 genomes]
rs7116671	0.81[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes]
rs7118516	0.81[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes]
rs7119471	0.81[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes]
rs7119665	0.88[EUR][1000 genomes]
rs7119934	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7120465	0.85[CHB][hapmap];0.93[EUR][1000 genomes]
rs7123204	0.81[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes]
rs7124030	0.93[EUR][1000 genomes]
rs7124116	0.81[CEU][hapmap];1.00[CHB][hapmap];0.93[EUR][1000 genomes]
rs7124753	0.93[EUR][1000 genomes]
rs7126909	0.80[EUR][1000 genomes]
rs7127803	0.81[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes]
rs7128881	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.83[YRI][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs713083	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7131169	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.85[YRI][hapmap];0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7131298	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.85[YRI][hapmap];0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs720383	0.81[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes]
rs72931818	0.93[EUR][1000 genomes]
rs72931829	0.93[EUR][1000 genomes]
rs72935512	0.91[EUR][1000 genomes]
rs72943487	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72943494	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72943497	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72945524	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72945540	0.82[EUR][1000 genomes]
rs72945566	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72945586	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72947606	0.81[EUR][1000 genomes]
rs72947636	0.87[EUR][1000 genomes]
rs72947653	0.93[EUR][1000 genomes]
rs72949614	0.93[EUR][1000 genomes]
rs72949656	0.93[EUR][1000 genomes]
rs73491984	0.93[EUR][1000 genomes]
rs73495923	0.93[EUR][1000 genomes]
rs7482006	0.91[EUR][1000 genomes]
rs7925252	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7930066	0.81[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes]
rs7930885	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7930988	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7931215	0.81[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes]
rs7932057	0.81[CEU][hapmap];1.00[CHB][hapmap];0.93[EUR][1000 genomes]
rs7932111	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7932603	0.83[EUR][1000 genomes]
rs7933197	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7936904	0.81[CEU][hapmap];1.00[CHB][hapmap];0.93[EUR][1000 genomes]
rs7937983	0.81[CEU][hapmap];0.93[EUR][1000 genomes]
rs7939623	0.81[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes]
rs7941418	0.93[EUR][1000 genomes]
rs7942838	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7947430	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7947859	0.88[EUR][1000 genomes]
rs7950612	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7950631	0.81[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes]
rs7951172	0.81[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048360	chr11:76900813-77387933	Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv541089	chr11:76900813-77387933	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv1049603	chr11:76900813-77520411	Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv541090	chr11:76900813-77520411	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	nsv1038974	chr11:77284036-77431228	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
6	nsv1041384	chr11:77284558-77419809	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
7	nsv1048892	chr11:77290458-77431228	Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
8	nsv1053074	chr11:77290458-77435831	Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
9	nsv468641	chr11:77301341-77420314	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
10	nsv555452	chr11:77301341-77420314	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
11	nsv1035494	chr11:77309696-77431228	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

mRNA abundance (count:11)

SNP	Gene	Cis/trans	Tissue	Source
rs7109527	RP11-91P24.7	cis	Artery Tibial	GTEx
rs7109527	CLNS1A	cis	lymphoblastoid	seeQTL
rs7109527	INTS4	Cis_1M	lymphoblastoid	RTeQTL
rs7109527	AAMDC	cis	Thyroid	GTEx
rs7109527	KCTD21	cis	parietal	SCAN
rs7109527	AAMDC	cis	Artery Tibial	GTEx
rs7109527	RP11-91P24.6	cis	Thyroid	GTEx
rs7109527	CLNS1A	cis	cerebellum	SCAN
rs7109527	RSF1	Cis_1M	lymphoblastoid	RTeQTL
rs7109527	RP11-91P24.6	cis	Artery Tibial	GTEx
rs7109527		cis	Lymphoblastoid	GTEx

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:77301400-77346000	Weak transcription	Small Intestine	intestine
2	chr11:77301800-77345800	Weak transcription	Spleen	Spleen
3	chr11:77313000-77345200	Weak transcription	Gastric	stomach
4	chr11:77313000-77347400	Weak transcription	Colonic Mucosa	Colon
5	chr11:77314000-77345800	Weak transcription	Pancreas	Pancrea
6	chr11:77314000-77347400	Weak transcription	Fetal Heart	heart
7	chr11:77315000-77341800	Strong transcription	HUES64 Cell Line	embryonic stem cell
8	chr11:77315200-77341400	Strong transcription	Primary monocytes fromperipheralblood	blood
9	chr11:77316400-77341400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr11:77316400-77346800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr11:77316600-77344200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
12	chr11:77316600-77347000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr11:77321000-77347800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr11:77323400-77348000	Weak transcription	Aorta	Aorta
15	chr11:77323600-77347200	Weak transcription	Fetal Brain Male	brain
16	chr11:77323800-77341400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr11:77326600-77347200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr11:77328200-77347200	Weak transcription	Psoas Muscle	Psoas
19	chr11:77330200-77341400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr11:77330200-77347400	Weak transcription	Brain Substantia Nigra	brain
21	chr11:77330400-77347400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
22	chr11:77330600-77341400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
23	chr11:77330600-77347400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr11:77332200-77341800	Strong transcription	Fetal Intestine Large	intestine
25	chr11:77333200-77346600	Weak transcription	Brain Cingulate Gyrus	brain
26	chr11:77333200-77348000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr11:77333600-77347600	Weak transcription	Rectal Smooth Muscle	rectum
28	chr11:77333800-77347800	Weak transcription	Esophagus	oesophagus
29	chr11:77335000-77347000	Weak transcription	Colon Smooth Muscle	Colon
30	chr11:77335200-77347200	Weak transcription	Brain Germinal Matrix	brain
31	chr11:77335400-77344800	Weak transcription	Muscle Satellite Cultured Cells	--
32	chr11:77335400-77347600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr11:77335800-77346800	Weak transcription	Fetal Brain Female	brain
34	chr11:77336600-77341600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
35	chr11:77336600-77346800	Weak transcription	NHDF-Ad	bronchial
36	chr11:77336600-77347400	Weak transcription	Brain Hippocampus Middle	brain
37	chr11:77336800-77343600	Weak transcription	Fetal Lung	lung
38	chr11:77336800-77344200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
39	chr11:77336800-77344800	Weak transcription	Primary neutrophils fromperipheralblood	blood
40	chr11:77336800-77345000	Weak transcription	Thymus	Thymus
41	chr11:77336800-77345200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr11:77336800-77345800	Weak transcription	Left Ventricle	heart
43	chr11:77336800-77346800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
44	chr11:77336800-77346800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
45	chr11:77336800-77346800	Weak transcription	Brain Angular Gyrus	brain
46	chr11:77336800-77346800	Weak transcription	Duodenum Smooth Muscle	Duodenum
47	chr11:77336800-77347400	Weak transcription	Brain Inferior Temporal Lobe	brain
48	chr11:77336800-77347400	Weak transcription	Sigmoid Colon	Sigmoid Colon
49	chr11:77336800-77347400	Weak transcription	Skeletal Muscle Male	skeletal muscle
50	chr11:77336800-77347400	Weak transcription	Stomach Smooth Muscle	stomach

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