Variant report

Variant	rs7124116
Chromosome Location	chr11:77492941-77492942
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:77492334..77494462-chr11:77499112..77501591,2	MCF-7	breast:
2	chr11:77491219..77494069-chr11:77529881..77532208,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000048649	Chromatin interaction
ENSG00000087884	Chromatin interaction

Extended variants
information (count: 267 )
Associated
traits (count: 9 )

rSNPs within LD-proxies of this variant (count:261)

rs_ID	r²[population]
rs10676933	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11237234	0.91[EUR][1000 genomes]
rs11237271	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.89[YRI][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11237274	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11822592	0.91[EUR][1000 genomes]
rs11823751	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11824150	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11825573	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11827357	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11828664	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12417215	0.83[CEU][hapmap];1.00[CHB][hapmap];0.84[EUR][1000 genomes]
rs12417232	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12417488	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12417760	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12417823	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12418152	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12418261	0.84[EUR][1000 genomes]
rs12418476	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12418551	0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12418559	0.83[CEU][hapmap];0.81[CHB][hapmap];0.85[JPT][hapmap];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12418734	0.81[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12418844	1.00[CEU][hapmap];0.92[CHB][hapmap];0.82[JPT][hapmap];0.91[YRI][hapmap];0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12419685	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12420021	0.84[EUR][1000 genomes]
rs12420092	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12420290	0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12420401	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12421391	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12421695	0.84[EUR][1000 genomes]
rs12421699	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12574507	0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12574660	0.84[EUR][1000 genomes]
rs12574999	0.91[EUR][1000 genomes]
rs12575014	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12575150	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12575197	0.83[CEU][hapmap]
rs12575763	0.83[EUR][1000 genomes]
rs12577552	0.81[CEU][hapmap];1.00[CHB][hapmap];0.90[EUR][1000 genomes]
rs12806790	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1540179	0.91[CEU][hapmap];1.00[CHB][hapmap];0.91[EUR][1000 genomes]
rs1544272	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1544273	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.86[YRI][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1544274	0.81[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17135800	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17135807	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.89[YRI][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17135809	0.81[CEU][hapmap];0.86[CHB][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17135811	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17135905	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17135969	0.81[CEU][hapmap];0.88[EUR][1000 genomes]
rs1892869	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1893901	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1945751	0.84[EUR][1000 genomes]
rs1986474	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2032415	0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2051484	0.81[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2154973	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2154988	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2156842	0.84[EUR][1000 genomes]
rs2186564	0.81[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2186573	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.89[YRI][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2187547	0.84[EUR][1000 genomes]
rs2276415	0.81[CEU][hapmap];1.00[CHB][hapmap];0.84[EUR][1000 genomes]
rs2276416	0.81[CEU][hapmap];1.00[CHB][hapmap];0.84[EUR][1000 genomes]
rs2298820	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28421376	0.91[EUR][1000 genomes]
rs28610388	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28730304	0.91[EUR][1000 genomes]
rs28930682	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.89[YRI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34446294	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35546645	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35774637	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3758664	0.80[EUR][1000 genomes]
rs3781616	0.83[CEU][hapmap];1.00[CHB][hapmap];0.93[EUR][1000 genomes]
rs3781617	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3819211	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3886195	0.83[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3949117	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4245454	0.83[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4245455	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4269952	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4399350	0.84[EUR][1000 genomes]
rs4448713	0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4491258	0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4531493	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.92[YRI][hapmap];0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4553396	0.81[EUR][1000 genomes]
rs4578411	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4606503	0.81[EUR][1000 genomes]
rs4944169	0.93[EUR][1000 genomes]
rs4944170	0.91[EUR][1000 genomes]
rs4944171	0.93[EUR][1000 genomes]
rs4944173	0.93[EUR][1000 genomes]
rs4944175	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4944176	0.81[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4944178	0.81[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4945183	0.82[EUR][1000 genomes]
rs4945186	0.87[EUR][1000 genomes]
rs4945187	0.93[EUR][1000 genomes]
rs4945189	0.91[EUR][1000 genomes]
rs4945190	0.91[EUR][1000 genomes]
rs4945191	0.91[CEU][hapmap];1.00[CHB][hapmap];0.91[EUR][1000 genomes]
rs4945192	0.93[EUR][1000 genomes]
rs4945197	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.89[YRI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4945202	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4945203	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.89[YRI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4945204	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4945205	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4945209	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4945210	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4945211	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4945212	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4945213	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4945214	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4945215	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4945217	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4945218	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4945219	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4945223	0.83[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55881536	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56097222	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56372481	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56817084	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs570786	0.86[AFR][1000 genomes]
rs57222975	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57332020	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57362996	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57588070	0.84[EUR][1000 genomes]
rs57687790	0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57805854	0.93[EUR][1000 genomes]
rs57935035	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58020660	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs58367448	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58393579	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58395847	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58608947	0.93[EUR][1000 genomes]
rs58720932	0.93[EUR][1000 genomes]
rs58914857	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59191974	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59239088	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs59404463	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59459776	0.91[EUR][1000 genomes]
rs59520338	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs59581090	0.83[EUR][1000 genomes]
rs59765258	0.93[EUR][1000 genomes]
rs59832115	0.91[EUR][1000 genomes]
rs59969402	0.93[EUR][1000 genomes]
rs59983642	0.84[EUR][1000 genomes]
rs60132034	0.93[EUR][1000 genomes]
rs60186049	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60208812	0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60849458	0.84[EUR][1000 genomes]
rs60929773	0.93[EUR][1000 genomes]
rs60948958	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61201484	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61358482	0.91[EUR][1000 genomes]
rs61361232	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61397357	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61468764	0.91[EUR][1000 genomes]
rs61576111	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61605540	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6592736	0.88[EUR][1000 genomes]
rs6592740	0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6592742	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.89[YRI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs66472445	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs66488360	0.93[EUR][1000 genomes]
rs66504136	0.93[EUR][1000 genomes]
rs66622455	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs66658383	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs66664368	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs66675536	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs66681087	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs66684353	0.93[EUR][1000 genomes]
rs66738005	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs66895426	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs66924979	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs66991096	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs67035387	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs67062156	0.83[EUR][1000 genomes]
rs67195676	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67200285	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67230007	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67241586	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67291795	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs67313689	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs67555375	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs67606281	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67680371	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs67724005	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs67736392	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs67769372	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs67775318	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs67807487	0.91[EUR][1000 genomes]
rs67843465	0.84[EUR][1000 genomes]
rs67875187	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67881763	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs68013767	0.93[EUR][1000 genomes]
rs68052959	0.84[EUR][1000 genomes]
rs68146267	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7104540	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7105526	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7106113	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7106659	0.87[EUR][1000 genomes]
rs7109199	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7109398	0.91[EUR][1000 genomes]
rs7109527	0.81[CEU][hapmap];1.00[CHB][hapmap];0.93[EUR][1000 genomes]
rs7109704	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7110322	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7110844	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7113415	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7116671	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7118516	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.89[YRI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7119471	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7119665	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7120465	0.91[CEU][hapmap];0.84[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7123204	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7124030	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7124753	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7126909	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7127803	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7128881	0.83[CEU][hapmap];1.00[CHB][hapmap];0.93[EUR][1000 genomes]
rs713083	0.91[EUR][1000 genomes]
rs7131169	0.91[CEU][hapmap];1.00[CHB][hapmap];0.91[EUR][1000 genomes]
rs7131298	0.91[CEU][hapmap];1.00[CHB][hapmap];0.91[EUR][1000 genomes]
rs720383	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72931818	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72931829	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72935512	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72939439	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72939448	0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72939452	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72939456	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72945524	0.84[EUR][1000 genomes]
rs72945566	0.93[EUR][1000 genomes]
rs72945586	0.93[EUR][1000 genomes]
rs72947606	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72947636	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72947653	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72949614	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72949656	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73491984	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73495923	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7482006	0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7925252	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[EUR][1000 genomes]
rs7930066	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7930885	0.93[EUR][1000 genomes]
rs7930988	0.91[EUR][1000 genomes]
rs7931215	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7932057	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.90[YRI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7932111	0.82[EUR][1000 genomes]
rs7933197	0.82[EUR][1000 genomes]
rs7936904	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7937983	1.00[CEU][hapmap];0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7939623	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.89[YRI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7941418	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7942838	0.88[EUR][1000 genomes]
rs7947430	0.84[EUR][1000 genomes]
rs7947859	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7950612	0.81[EUR][1000 genomes]
rs7950631	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.89[YRI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7951172	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9667816	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9667819	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049603	chr11:76900813-77520411	Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv541090	chr11:76900813-77520411	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv1050891	chr11:77416645-77788002	Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	nsv1037292	chr11:77431583-77745934	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
5	nsv541092	chr11:77431583-77745934	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
6	nsv949316	chr11:77454076-77769885	Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

mRNA abundance (count:9)

SNP	Gene	Cis/trans	Tissue	Source
rs7124116		cis	Lymphoblastoid	GTEx
rs7124116	RP11-91P24.6	cis	Thyroid	GTEx
rs7124116	AAMDC	cis	Thyroid	GTEx
rs7124116	AAMDC	cis	Artery Tibial	GTEx
rs7124116	INTS4	Cis_1M	lymphoblastoid	RTeQTL
rs7124116	RSF1	Cis_1M	lymphoblastoid	RTeQTL
rs7124116	RP11-91P24.6	cis	Artery Tibial	GTEx
rs7124116	RP11-91P24.7	cis	Artery Tibial	GTEx
rs7124116	C11orf67	cis	normal skin	skin_eQTL

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:77442800-77500200	Weak transcription	Pancreas	Pancrea
2	chr11:77443200-77500200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr11:77459400-77498200	Weak transcription	NHEK	skin
4	chr11:77460000-77495800	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr11:77462200-77500200	Weak transcription	Gastric	stomach
6	chr11:77463800-77527000	Weak transcription	Aorta	Aorta
7	chr11:77465200-77500200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr11:77467000-77500200	Weak transcription	Esophagus	oesophagus
9	chr11:77475200-77495600	Weak transcription	Fetal Intestine Large	intestine
10	chr11:77475200-77498000	Weak transcription	HMEC	breast
11	chr11:77475200-77501600	Weak transcription	Brain Germinal Matrix	brain
12	chr11:77475200-77502600	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr11:77475200-77527800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr11:77475400-77495800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr11:77475400-77500400	Weak transcription	Lung	lung
16	chr11:77475400-77500600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr11:77475400-77501800	Weak transcription	Thymus	Thymus
18	chr11:77475400-77502400	Weak transcription	Fetal Muscle Leg	muscle
19	chr11:77475400-77504200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr11:77475400-77522000	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr11:77475400-77529000	Weak transcription	NHLF	lung
22	chr11:77475400-77530000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr11:77475600-77495200	Weak transcription	Fetal Muscle Trunk	muscle
24	chr11:77475600-77498000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr11:77475600-77498200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr11:77475600-77500200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr11:77475600-77511600	Weak transcription	Rectal Mucosa Donor 31	rectum
28	chr11:77475600-77511600	Weak transcription	Stomach Smooth Muscle	stomach
29	chr11:77475800-77494400	Weak transcription	Primary monocytes fromperipheralblood	blood
30	chr11:77475800-77510400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr11:77475800-77522000	Weak transcription	Hela-S3	cervix
32	chr11:77476800-77495800	Weak transcription	Small Intestine	intestine
33	chr11:77478600-77498600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
34	chr11:77478800-77495600	Weak transcription	H9 Cell Line	embryonic stem cell
35	chr11:77482600-77495200	Weak transcription	Fetal Thymus	thymus
36	chr11:77482600-77495600	Weak transcription	Sigmoid Colon	Sigmoid Colon
37	chr11:77482600-77500200	Weak transcription	Right Ventricle	heart
38	chr11:77482600-77509800	Weak transcription	Adipose Nuclei	Adipose
39	chr11:77482800-77495800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
40	chr11:77482800-77501800	Weak transcription	Duodenum Mucosa	Duodenum
41	chr11:77482800-77525800	Weak transcription	Fetal Lung	lung
42	chr11:77483400-77493800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
43	chr11:77483400-77495800	Weak transcription	Psoas Muscle	Psoas
44	chr11:77483600-77498800	Weak transcription	Primary hematopoietic stem cells	blood
45	chr11:77483800-77499000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
46	chr11:77484400-77497600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
47	chr11:77486200-77493200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
48	chr11:77486600-77500000	Weak transcription	Primary T cells fromperipheralblood	blood
49	chr11:77487000-77499600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr11:77487200-77493200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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