Variant report

Variant	rs2186564
Chromosome Location	chr11:77583266-77583267
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:77583266-77583435	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:77581791..77584975-chr11:77585313..77588016,3	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-INTS4-2	chr11:77583198-77583308	ENSG00000254459.1

Variant related genes	Relation type
ENSG00000241782	TF binding region
ENSG00000255449	TF binding region
AAMDC	TF binding region
ENSG00000087884	Chromatin interaction

Extended variants
information (count: 202 )
Associated
traits (count: 10 )

rSNPs within LD-proxies of this variant (count:193)

rs_ID	r²[population]
rs10676933	0.84[EUR][1000 genomes]
rs11237271	0.81[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];0.92[TSI][hapmap];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11237274	0.80[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1124590	0.89[CEU][hapmap];0.92[YRI][hapmap]
rs11823751	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11824150	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11825573	0.81[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];0.92[TSI][hapmap];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11827357	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11828664	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12417232	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12417488	0.81[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];0.92[TSI][hapmap];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12417760	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12417823	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12418152	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12418476	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12418551	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12418559	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[YRI][hapmap];0.96[EUR][1000 genomes]
rs12418734	0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12418844	0.81[CEU][hapmap];0.84[CHB][hapmap];0.81[JPT][hapmap];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12419685	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12419883	0.80[YRI][hapmap]
rs12420092	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12420290	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12420401	0.81[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];0.92[TSI][hapmap];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12420528	0.90[YRI][hapmap]
rs12421391	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12421699	0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12574507	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12574999	0.87[EUR][1000 genomes]
rs12575014	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12575150	0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12577951	0.91[ASW][hapmap];0.89[CEU][hapmap];1.00[GIH][hapmap];0.85[MEX][hapmap];0.83[TSI][hapmap];0.92[YRI][hapmap]
rs12806790	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1544272	0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1544273	0.81[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1544274	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];0.92[TSI][hapmap];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17135800	0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17135807	0.81[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];0.92[TSI][hapmap];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17135809	0.81[CEU][hapmap];0.87[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];0.85[MEX][hapmap];0.82[MKK][hapmap];0.92[TSI][hapmap];0.92[YRI][hapmap];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17135811	0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17135905	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17135969	0.91[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.85[MEX][hapmap];0.92[TSI][hapmap];0.92[YRI][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1892868	0.83[ASW][hapmap];1.00[YRI][hapmap]
rs1892869	0.81[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];0.92[TSI][hapmap];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1893901	0.81[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];0.92[TSI][hapmap];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1986474	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.95[GIH][hapmap];0.92[JPT][hapmap];0.85[MEX][hapmap];0.85[MKK][hapmap];0.92[TSI][hapmap];1.00[YRI][hapmap];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2032415	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2051484	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.92[TSI][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2154973	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2154988	0.81[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];0.92[TSI][hapmap];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2186573	0.81[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];0.85[MEX][hapmap];0.92[TSI][hapmap];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2298820	0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28610388	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28930682	0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34446294	0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35546645	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35774637	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3781617	0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3819211	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];0.85[MEX][hapmap];0.85[MKK][hapmap];0.92[TSI][hapmap];1.00[YRI][hapmap];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3886195	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3949117	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4245454	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4245455	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4269952	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4448713	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4491258	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4531493	0.81[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];0.92[TSI][hapmap];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4578411	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4944175	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4944176	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.85[MKK][hapmap];0.92[TSI][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4944178	0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.93[JPT][hapmap];0.85[MEX][hapmap];0.85[MKK][hapmap];0.92[TSI][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4945197	0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4945202	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4945203	0.81[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];0.85[MEX][hapmap];0.92[TSI][hapmap];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4945204	0.81[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];0.92[TSI][hapmap];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4945205	0.81[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];0.92[TSI][hapmap];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4945209	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4945210	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4945211	0.81[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];0.92[TSI][hapmap];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4945212	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4945213	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4945214	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4945215	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4945217	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4945218	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4945219	0.81[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];0.92[TSI][hapmap];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4945223	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs55881536	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56097222	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56372481	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs56817084	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57222975	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57332020	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs57362996	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs57687790	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs57935035	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs58020660	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58367448	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs58393579	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs58395847	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs58914857	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59191974	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59239088	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59404463	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59520338	0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs60186049	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs60208812	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs608539	0.81[CHB][hapmap]
rs60948958	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61201484	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61361232	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61397357	0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61576111	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61605540	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6592740	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6592742	0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs66472445	0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs66622455	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs66658383	0.96[EUR][1000 genomes]
rs66664368	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs66675536	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs66681087	0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs667213	0.81[CHB][hapmap]
rs66738005	0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs66895426	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs66924979	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs66991096	0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs67035387	0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs67195676	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs67200285	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs67230007	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs67241586	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs67291795	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs67313689	0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs67555375	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs67606281	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs67680371	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs67724005	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs67736392	0.96[EUR][1000 genomes]
rs67769372	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs67775318	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs67875187	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs67881763	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs68146267	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7104540	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7105526	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7106113	0.81[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];0.92[TSI][hapmap];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7109199	0.80[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7109704	0.96[EUR][1000 genomes]
rs7110322	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7110844	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7113415	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7116671	0.81[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];0.92[TSI][hapmap];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7118516	0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7119471	0.81[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];0.92[TSI][hapmap];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7119665	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7120465	0.85[CHB][hapmap];0.82[JPT][hapmap];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7123204	0.81[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];0.85[MEX][hapmap];0.92[TSI][hapmap];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7124030	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7124116	0.81[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7124753	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7126909	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7127803	0.81[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];0.92[TSI][hapmap];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs720383	0.81[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];0.92[TSI][hapmap];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72931818	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72931829	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72935512	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72939439	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72939448	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72939452	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72939456	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72947606	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72947636	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72947653	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72949614	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72949656	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73491984	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73495923	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7482006	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7930066	0.81[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];0.92[TSI][hapmap];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7931215	0.81[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];0.85[MEX][hapmap];0.92[TSI][hapmap];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7932057	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7935050	0.80[YRI][hapmap]
rs7936904	0.81[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7937983	0.81[CEU][hapmap];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7939623	0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7941418	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7946876	0.91[ASW][hapmap];0.90[GIH][hapmap];0.86[MEX][hapmap];0.85[YRI][hapmap]
rs7947859	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7950631	0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7951172	0.81[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];0.92[TSI][hapmap];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9667816	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9667819	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050891	chr11:77416645-77788002	Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	nsv1037292	chr11:77431583-77745934	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv541092	chr11:77431583-77745934	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
4	nsv949316	chr11:77454076-77769885	Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
5	nsv520740	chr11:77553638-77997936	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
6	nsv1035753	chr11:77577384-77866386	Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
7	nsv541093	chr11:77577384-77866386	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
8	nsv555453	chr11:77577494-77618441	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv524537	chr11:77583266-77593221	Strong transcription Genic enhancers Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:10)

SNP	Gene	Cis/trans	Tissue	Source
rs2186564	RSF1	Cis_1M	lymphoblastoid	RTeQTL
rs2186564	INTS4	Cis_1M	lymphoblastoid	RTeQTL
rs2186564	RP11-91P24.6	cis	Thyroid	GTEx
rs2186564	CLNS1A	cis	cerebellum	SCAN
rs2186564	RP11-91P24.6	cis	Artery Tibial	GTEx
rs2186564	AAMDC	cis	Artery Tibial	GTEx
rs2186564	C11orf67	cis	normal skin	skin_eQTL
rs2186564	AAMDC	cis	Thyroid	GTEx
rs2186564	RP11-91P24.7	cis	Thyroid	GTEx
rs2186564	RP11-91P24.7	cis	Artery Tibial	GTEx

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:77566000-77592600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr11:77566200-77589000	Weak transcription	NHLF	lung
3	chr11:77566200-77589600	Weak transcription	Esophagus	oesophagus
4	chr11:77566200-77594600	Weak transcription	Colon Smooth Muscle	Colon
5	chr11:77566800-77587800	Weak transcription	A549	lung
6	chr11:77567000-77586600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr11:77567600-77589600	Weak transcription	HepG2	liver
8	chr11:77567800-77589400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr11:77567800-77594800	Weak transcription	Brain Angular Gyrus	brain
10	chr11:77568000-77586800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr11:77568000-77587000	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr11:77568200-77589400	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr11:77568200-77590400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr11:77568200-77594600	Weak transcription	Fetal Kidney	kidney
15	chr11:77569000-77597600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr11:77574600-77593200	Weak transcription	Gastric	stomach
17	chr11:77576200-77586800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
18	chr11:77577200-77583800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr11:77577400-77588800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr11:77577400-77589400	Strong transcription	Fetal Muscle Leg	muscle
21	chr11:77577400-77630800	Weak transcription	Fetal Heart	heart
22	chr11:77578000-77585800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr11:77578200-77589600	Strong transcription	Adipose Nuclei	Adipose
24	chr11:77578400-77586600	Weak transcription	Primary neutrophils fromperipheralblood	blood
25	chr11:77578400-77589400	Weak transcription	NHDF-Ad	bronchial
26	chr11:77578600-77591400	Weak transcription	Pancreatic Islets	Pancreatic Islet
27	chr11:77578600-77597400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr11:77578800-77590600	Weak transcription	Hela-S3	cervix
29	chr11:77578800-77601400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr11:77579000-77593200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
31	chr11:77579200-77625000	Weak transcription	HMEC	breast
32	chr11:77579400-77589400	Weak transcription	NHEK	skin
33	chr11:77579600-77583400	Strong transcription	Left Ventricle	heart
34	chr11:77579600-77589800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
35	chr11:77579800-77583400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr11:77579800-77583400	Strong transcription	Thymus	Thymus
37	chr11:77579800-77583600	Strong transcription	Fetal Muscle Trunk	muscle
38	chr11:77579800-77583600	Strong transcription	Skeletal Muscle Male	skeletal muscle
39	chr11:77579800-77583800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr11:77579800-77583800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr11:77579800-77584400	Strong transcription	Fetal Intestine Large	intestine
42	chr11:77579800-77585200	Strong transcription	Fetal Lung	lung
43	chr11:77579800-77589000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr11:77579800-77589000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr11:77579800-77597800	Strong transcription	Skeletal Muscle Female	skeletal muscle
46	chr11:77580000-77583600	Strong transcription	Primary T cells fromperipheralblood	blood
47	chr11:77580000-77583800	Strong transcription	Duodenum Smooth Muscle	Duodenum
48	chr11:77580000-77584000	Strong transcription	Liver	Liver
49	chr11:77580000-77597800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr11:77580200-77597400	Strong transcription	Monocytes-CD14+_RO01746	blood

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