Variant report
Variant | rs12574999 |
---|---|
Chromosome Location | chr11:77354007-77354008 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:3 , 50 per page) page:
1
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000074201 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs11237234 | 0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs11237271 | 0.91[EUR][1000 genomes] |
rs11237274 | 0.91[EUR][1000 genomes] |
rs11822592 | 0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs11823751 | 0.91[EUR][1000 genomes] |
rs11824150 | 0.91[EUR][1000 genomes] |
rs11825573 | 0.91[EUR][1000 genomes] |
rs11827357 | 0.90[EUR][1000 genomes] |
rs11828664 | 0.88[EUR][1000 genomes] |
rs12417215 | 0.89[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs12417232 | 0.91[EUR][1000 genomes] |
rs12417488 | 0.91[EUR][1000 genomes] |
rs12417760 | 0.90[EUR][1000 genomes] |
rs12417823 | 0.91[EUR][1000 genomes] |
rs12418152 | 0.91[EUR][1000 genomes] |
rs12418261 | 0.89[EUR][1000 genomes];0.80[ASN][1000 genomes] |
rs12418476 | 0.91[EUR][1000 genomes] |
rs12418551 | 0.90[EUR][1000 genomes] |
rs12418559 | 0.91[EUR][1000 genomes] |
rs12418734 | 0.91[EUR][1000 genomes] |
rs12418844 | 0.91[EUR][1000 genomes] |
rs12419186 | 0.85[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs12419685 | 0.91[EUR][1000 genomes] |
rs12420021 | 0.89[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs12420092 | 0.87[EUR][1000 genomes] |
rs12420290 | 0.90[EUR][1000 genomes] |
rs12420401 | 0.90[EUR][1000 genomes] |
rs12421391 | 0.91[EUR][1000 genomes] |
rs12421695 | 0.89[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs12421699 | 0.91[EUR][1000 genomes] |
rs12574507 | 0.90[EUR][1000 genomes] |
rs12574660 | 0.89[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs12575014 | 0.91[EUR][1000 genomes] |
rs12575150 | 0.91[EUR][1000 genomes] |
rs12575305 | 0.82[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs12575763 | 0.88[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs12577552 | 0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs12806790 | 0.88[EUR][1000 genomes] |
rs1540179 | 0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs1544272 | 0.91[EUR][1000 genomes] |
rs1544273 | 0.91[EUR][1000 genomes] |
rs1544274 | 0.91[EUR][1000 genomes] |
rs17135800 | 0.91[EUR][1000 genomes] |
rs17135807 | 0.91[EUR][1000 genomes] |
rs17135809 | 0.91[EUR][1000 genomes] |
rs17135811 | 0.91[EUR][1000 genomes] |
rs17135905 | 0.90[EUR][1000 genomes] |
rs1892869 | 0.91[EUR][1000 genomes] |
rs1893901 | 0.91[EUR][1000 genomes] |
rs1945751 | 0.89[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs1986474 | 0.91[EUR][1000 genomes] |
rs2032415 | 0.90[EUR][1000 genomes] |
rs2154973 | 0.91[EUR][1000 genomes] |
rs2154988 | 0.91[EUR][1000 genomes] |
rs2156842 | 0.89[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs2186564 | 0.87[EUR][1000 genomes] |
rs2186573 | 0.91[EUR][1000 genomes] |
rs2187547 | 0.89[EUR][1000 genomes];0.80[ASN][1000 genomes] |
rs2276415 | 0.89[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs2276416 | 0.89[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs2298820 | 0.91[EUR][1000 genomes] |
rs28421376 | 0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs28610388 | 0.91[EUR][1000 genomes] |
rs28730304 | 0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs28930682 | 0.91[EUR][1000 genomes] |
rs34446294 | 0.91[EUR][1000 genomes] |
rs35546645 | 0.86[EUR][1000 genomes] |
rs35774637 | 0.91[EUR][1000 genomes] |
rs3781616 | 0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs3781617 | 0.91[EUR][1000 genomes] |
rs3819211 | 0.91[EUR][1000 genomes] |
rs3886195 | 0.90[EUR][1000 genomes] |
rs3949117 | 0.91[EUR][1000 genomes] |
rs4269952 | 0.89[EUR][1000 genomes] |
rs4301811 | 0.85[ASN][1000 genomes] |
rs4399350 | 0.89[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs4448713 | 0.90[EUR][1000 genomes] |
rs4486654 | 0.85[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs4491258 | 0.90[EUR][1000 genomes] |
rs4531493 | 0.91[EUR][1000 genomes] |
rs4553396 | 0.87[EUR][1000 genomes];0.80[ASN][1000 genomes] |
rs4578411 | 0.89[EUR][1000 genomes] |
rs4606503 | 0.86[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs4944169 | 0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs4944170 | 0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs4944171 | 0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs4944173 | 0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs4944175 | 0.91[EUR][1000 genomes] |
rs4944176 | 0.90[EUR][1000 genomes] |
rs4945182 | 0.85[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs4945183 | 0.88[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs4945186 | 0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs4945187 | 0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs4945189 | 0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs4945190 | 0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs4945191 | 0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs4945192 | 0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs4945197 | 0.91[EUR][1000 genomes] |
rs4945202 | 0.91[EUR][1000 genomes] |
rs4945203 | 0.91[EUR][1000 genomes] |
rs4945204 | 0.91[EUR][1000 genomes] |
rs4945205 | 0.91[EUR][1000 genomes] |
rs4945209 | 0.91[EUR][1000 genomes] |
rs4945210 | 0.91[EUR][1000 genomes] |
rs4945211 | 0.91[EUR][1000 genomes] |
rs4945212 | 0.91[EUR][1000 genomes] |
rs4945213 | 0.91[EUR][1000 genomes] |
rs4945214 | 0.91[EUR][1000 genomes] |
rs4945215 | 0.91[EUR][1000 genomes] |
rs4945217 | 0.86[EUR][1000 genomes] |
rs4945218 | 0.91[EUR][1000 genomes] |
rs4945219 | 0.91[EUR][1000 genomes] |
rs55881536 | 0.91[EUR][1000 genomes] |
rs56097222 | 0.84[AMR][1000 genomes];0.88[EUR][1000 genomes] |
rs56175172 | 0.89[EUR][1000 genomes] |
rs56372481 | 0.86[AMR][1000 genomes];0.88[EUR][1000 genomes] |
rs56817084 | 0.91[EUR][1000 genomes] |
rs57222975 | 0.91[EUR][1000 genomes] |
rs57332020 | 0.84[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs57362996 | 0.91[EUR][1000 genomes] |
rs57588070 | 0.89[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs57687790 | 0.86[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs57805854 | 0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs57935035 | 0.91[EUR][1000 genomes] |
rs58367448 | 0.91[EUR][1000 genomes] |
rs58393579 | 0.91[EUR][1000 genomes] |
rs58395847 | 0.91[EUR][1000 genomes] |
rs58608947 | 0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs58720932 | 0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs58914857 | 0.91[EUR][1000 genomes] |
rs59191974 | 0.91[EUR][1000 genomes] |
rs59404463 | 0.91[EUR][1000 genomes] |
rs59459776 | 0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs59520338 | 0.91[EUR][1000 genomes] |
rs59581090 | 0.88[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs59765258 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs59832115 | 0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs59969402 | 0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs59983642 | 0.89[EUR][1000 genomes] |
rs60132034 | 0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs60186049 | 0.91[EUR][1000 genomes] |
rs60842160 | 0.89[EUR][1000 genomes] |
rs60849458 | 0.89[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs60929773 | 0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs60948958 | 0.91[EUR][1000 genomes] |
rs61201484 | 0.91[EUR][1000 genomes] |
rs61358482 | 0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs61361232 | 0.91[EUR][1000 genomes] |
rs61397357 | 0.91[EUR][1000 genomes] |
rs61468764 | 0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs61576111 | 0.91[EUR][1000 genomes] |
rs6592736 | 0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs6592740 | 0.86[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs6592742 | 0.91[EUR][1000 genomes] |
rs66472445 | 0.91[EUR][1000 genomes] |
rs66488360 | 0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs66504136 | 0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs66622455 | 0.91[EUR][1000 genomes] |
rs66658383 | 0.91[EUR][1000 genomes] |
rs66664368 | 0.90[EUR][1000 genomes] |
rs66675536 | 0.91[EUR][1000 genomes] |
rs66681087 | 0.91[EUR][1000 genomes] |
rs66684353 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs66738005 | 0.91[EUR][1000 genomes] |
rs66895426 | 0.91[EUR][1000 genomes] |
rs66924979 | 0.91[EUR][1000 genomes] |
rs66991096 | 0.91[EUR][1000 genomes] |
rs67035387 | 0.91[EUR][1000 genomes] |
rs67062156 | 0.88[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs67195676 | 0.91[EUR][1000 genomes] |
rs67200285 | 0.91[EUR][1000 genomes] |
rs67230007 | 0.91[EUR][1000 genomes] |
rs67241586 | 0.91[EUR][1000 genomes] |
rs67291795 | 0.91[EUR][1000 genomes] |
rs67313689 | 0.91[EUR][1000 genomes] |
rs67555375 | 0.91[EUR][1000 genomes] |
rs67606281 | 0.91[EUR][1000 genomes] |
rs67680371 | 0.91[EUR][1000 genomes] |
rs67724005 | 0.91[EUR][1000 genomes] |
rs67736392 | 0.91[EUR][1000 genomes] |
rs67769372 | 0.91[EUR][1000 genomes] |
rs67775318 | 0.91[EUR][1000 genomes] |
rs67807487 | 0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs67843465 | 0.89[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs67875187 | 0.91[EUR][1000 genomes] |
rs67881763 | 0.96[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs68013767 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs68052959 | 0.89[EUR][1000 genomes];0.80[ASN][1000 genomes] |
rs68146267 | 0.91[EUR][1000 genomes] |
rs7104540 | 0.91[EUR][1000 genomes] |
rs7105526 | 0.91[EUR][1000 genomes] |
rs7106113 | 0.91[EUR][1000 genomes] |
rs7106659 | 0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs7109199 | 0.91[EUR][1000 genomes] |
rs7109398 | 0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs7109527 | 0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs7109704 | 0.91[EUR][1000 genomes] |
rs7110322 | 0.90[EUR][1000 genomes] |
rs7110844 | 0.91[EUR][1000 genomes] |
rs7113415 | 0.91[EUR][1000 genomes] |
rs7116671 | 0.91[EUR][1000 genomes] |
rs7118516 | 0.91[EUR][1000 genomes] |
rs7119471 | 0.91[EUR][1000 genomes] |
rs7119665 | 0.86[EUR][1000 genomes] |
rs7119934 | 0.88[EUR][1000 genomes] |
rs7120465 | 0.91[EUR][1000 genomes] |
rs7123204 | 0.91[EUR][1000 genomes] |
rs7124030 | 0.91[EUR][1000 genomes] |
rs7124116 | 0.91[EUR][1000 genomes] |
rs7124753 | 0.91[EUR][1000 genomes] |
rs7127803 | 0.91[EUR][1000 genomes] |
rs7128881 | 0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs713083 | 0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs7131169 | 0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs7131298 | 0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs720383 | 0.91[EUR][1000 genomes] |
rs72931818 | 0.91[EUR][1000 genomes] |
rs72931829 | 0.91[EUR][1000 genomes] |
rs72935512 | 0.89[EUR][1000 genomes] |
rs72943487 | 0.87[EUR][1000 genomes] |
rs72943494 | 0.88[EUR][1000 genomes] |
rs72943497 | 0.88[EUR][1000 genomes] |
rs72945524 | 0.89[EUR][1000 genomes];0.80[ASN][1000 genomes] |
rs72945540 | 0.81[EUR][1000 genomes] |
rs72945566 | 0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs72945586 | 0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs72947636 | 0.86[EUR][1000 genomes] |
rs72947653 | 0.91[EUR][1000 genomes] |
rs72949614 | 0.91[EUR][1000 genomes] |
rs72949656 | 0.91[EUR][1000 genomes] |
rs73491984 | 0.91[EUR][1000 genomes] |
rs73495923 | 0.91[EUR][1000 genomes] |
rs7482006 | 0.86[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs7925252 | 0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs7930066 | 0.91[EUR][1000 genomes] |
rs7930885 | 0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs7930988 | 0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs7931215 | 0.91[EUR][1000 genomes] |
rs7932057 | 0.91[EUR][1000 genomes] |
rs7932111 | 0.88[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs7932603 | 0.82[EUR][1000 genomes] |
rs7933197 | 0.88[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs7936904 | 0.91[EUR][1000 genomes] |
rs7937983 | 0.91[EUR][1000 genomes] |
rs7939623 | 0.91[EUR][1000 genomes] |
rs7941418 | 0.91[EUR][1000 genomes] |
rs7942838 | 0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs7947430 | 0.89[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs7947859 | 0.87[EUR][1000 genomes] |
rs7950612 | 0.87[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs7950631 | 0.91[EUR][1000 genomes] |
rs7951172 | 0.91[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1048360 | chr11:76900813-77387933 | Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 24 gene(s) | inside rSNPs | diseases |
2 | nsv541089 | chr11:76900813-77387933 | Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 24 gene(s) | inside rSNPs | diseases |
3 | nsv1049603 | chr11:76900813-77520411 | Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 29 gene(s) | inside rSNPs | diseases |
4 | nsv541090 | chr11:76900813-77520411 | Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 29 gene(s) | inside rSNPs | diseases |
5 | nsv1038974 | chr11:77284036-77431228 | Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 16 gene(s) | inside rSNPs | diseases |
6 | nsv1041384 | chr11:77284558-77419809 | Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 15 gene(s) | inside rSNPs | diseases |
7 | nsv1048892 | chr11:77290458-77431228 | Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 16 gene(s) | inside rSNPs | diseases |
8 | nsv1053074 | chr11:77290458-77435831 | Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 16 gene(s) | inside rSNPs | diseases |
9 | nsv468641 | chr11:77301341-77420314 | Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 15 gene(s) | inside rSNPs | diseases |
10 | nsv555452 | chr11:77301341-77420314 | Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 15 gene(s) | inside rSNPs | diseases |
11 | nsv1035494 | chr11:77309696-77431228 | Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 15 gene(s) | inside rSNPs | diseases |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr11:77349600-77354600 | Weak transcription | Foreskin Keratinocyte Primary Cells skin03 | Skin |
2 | chr11:77349600-77355600 | Weak transcription | IMR90 fetal lung fibroblasts Cell Line | lung |
3 | chr11:77349600-77355600 | Weak transcription | Hela-S3 | cervix |
4 | chr11:77349600-77355600 | Weak transcription | NHEK | skin |
5 | chr11:77350400-77355600 | Weak transcription | iPS DF 6.9 Cell Line | embryonic stem cell |
6 | chr11:77352800-77355000 | Enhancers | Liver | Liver |
7 | chr11:77353600-77355400 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
8 | chr11:77354000-77356000 | Enhancers | HepG2 | liver |