Variant report

Variant	rs58040561
Chromosome Location	chr10:99315224-99315225
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11556394	1.00[AMR][1000 genomes]
rs56818599	1.00[AMR][1000 genomes]
rs58090494	1.00[AMR][1000 genomes]
rs59403844	1.00[AMR][1000 genomes]
rs59410931	1.00[AMR][1000 genomes]
rs6584150	1.00[AMR][1000 genomes]
rs7086155	1.00[AMR][1000 genomes]
rs73322513	1.00[AMR][1000 genomes]
rs73322524	1.00[AMR][1000 genomes]
rs73322563	1.00[AMR][1000 genomes]
rs73324603	1.00[AMR][1000 genomes]
rs73324645	1.00[AMR][1000 genomes]
rs73324684	1.00[AMR][1000 genomes]
rs73332794	1.00[AMR][1000 genomes]
rs73332796	1.00[AMR][1000 genomes]
rs73334504	1.00[AMR][1000 genomes]
rs73334529	1.00[AMR][1000 genomes]
rs73334558	1.00[AMR][1000 genomes]
rs73334560	1.00[AMR][1000 genomes]
rs73334562	1.00[AMR][1000 genomes]
rs73334566	1.00[AMR][1000 genomes]
rs74155508	1.00[AMR][1000 genomes]
rs7914710	1.00[AMR][1000 genomes]
rs7915140	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817777	chr10:99196035-99558169	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv1036494	chr10:99267639-99345207	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
3	nsv7508	chr10:99285375-99330501	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
4	nsv1047359	chr10:99306501-99369013	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:99303000-99327600	Weak transcription	Aorta	Aorta
2	chr10:99303200-99327600	Weak transcription	Pancreas	Pancrea
3	chr10:99303800-99327800	Weak transcription	Ovary	ovary
4	chr10:99309800-99316200	Weak transcription	Liver	Liver
5	chr10:99310400-99327600	Weak transcription	Lung	lung
6	chr10:99310400-99327800	Weak transcription	Right Ventricle	heart
7	chr10:99310800-99320600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr10:99310800-99326400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr10:99310800-99327600	Weak transcription	Primary neutrophils fromperipheralblood	blood
10	chr10:99310800-99327600	Weak transcription	Spleen	Spleen
11	chr10:99311400-99327600	Weak transcription	Left Ventricle	heart
12	chr10:99311400-99328800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr10:99313200-99315400	Enhancers	GM12878-XiMat	blood
14	chr10:99313800-99315800	Weak transcription	HMEC	breast
15	chr10:99313800-99316000	Weak transcription	NHEK	skin
16	chr10:99313800-99319400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr10:99313800-99320000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr10:99313800-99320200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr10:99313800-99320200	Weak transcription	Adipose Nuclei	Adipose
20	chr10:99313800-99320200	Weak transcription	Osteobl	bone
21	chr10:99313800-99321800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr10:99313800-99327400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr10:99313800-99327600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr10:99313800-99327600	Weak transcription	Stomach Smooth Muscle	stomach
25	chr10:99313800-99327600	Weak transcription	NHLF	lung
26	chr10:99313800-99329800	Weak transcription	Gastric	stomach
27	chr10:99313800-99330600	Weak transcription	Brain Angular Gyrus	brain
28	chr10:99314000-99321600	Weak transcription	H9 Cell Line	embryonic stem cell
29	chr10:99314000-99326200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr10:99314600-99315400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr10:99314800-99315400	Weak transcription	Fetal Muscle Leg	muscle
32	chr10:99314800-99319000	Weak transcription	Psoas Muscle	Psoas
33	chr10:99314800-99320800	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr10:99315000-99320200	Weak transcription	Skeletal Muscle Female	skeletal muscle
35	chr10:99315000-99321600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr10:99315000-99329000	Weak transcription	HSMMtube	muscle

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