Variant report

Variant	rs73322513
Chromosome Location	chr10:99433861-99433862
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:99423436..99426150-chr10:99432086..99434715,3	K562	blood:
2	chr10:99431862..99434859-chr10:99467271..99469904,2	MCF-7	breast:
3	chr10:99408792..99411282-chr10:99432665..99436931,3	MCF-7	breast:
4	chr10:99431427..99433956-chr10:99439441..99442132,2	K562	blood:
5	chr10:99425999..99428953-chr10:99433679..99435549,2	MCF-7	breast:
6	chr10:99398973..99401617-chr10:99432449..99434192,2	K562	blood:

Variant related genes	Relation type
ENSG00000155252	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11556394	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56818599	1.00[AMR][1000 genomes]
rs58040561	1.00[AMR][1000 genomes]
rs58090494	1.00[AMR][1000 genomes]
rs59403844	1.00[AMR][1000 genomes]
rs59410931	1.00[AMR][1000 genomes]
rs6584150	1.00[AMR][1000 genomes]
rs7086155	1.00[AMR][1000 genomes]
rs73322524	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73322563	1.00[AMR][1000 genomes]
rs73324603	1.00[AMR][1000 genomes]
rs73324645	1.00[AMR][1000 genomes]
rs73324684	1.00[AMR][1000 genomes]
rs73324696	1.00[AMR][1000 genomes]
rs73326503	1.00[AMR][1000 genomes]
rs73326520	1.00[AMR][1000 genomes]
rs73326524	1.00[AMR][1000 genomes]
rs73332794	1.00[AMR][1000 genomes]
rs73332796	1.00[AMR][1000 genomes]
rs73334504	1.00[AMR][1000 genomes]
rs73334529	1.00[AMR][1000 genomes]
rs73334558	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73334560	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73334562	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73334566	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74155508	1.00[AMR][1000 genomes]
rs7914710	1.00[AMR][1000 genomes]
rs7915140	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817777	chr10:99196035-99558169	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv1045292	chr10:99411153-99450861	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:99401800-99443600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr10:99402000-99444600	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr10:99409200-99444800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr10:99409400-99445800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr10:99410400-99436200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr10:99410400-99436200	Strong transcription	HUES64 Cell Line	embryonic stem cell
7	chr10:99411000-99437000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr10:99411600-99437800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr10:99420800-99436200	Strong transcription	Monocytes-CD14+_RO01746	blood
10	chr10:99421200-99436200	Strong transcription	Primary monocytes fromperipheralblood	blood
11	chr10:99421600-99435800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr10:99421600-99440400	Strong transcription	Fetal Stomach	stomach
13	chr10:99421800-99435800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr10:99421800-99436600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
15	chr10:99422200-99437800	Strong transcription	HUES6 Cell Line	embryonic stem cell
16	chr10:99424400-99434000	Weak transcription	Fetal Heart	heart
17	chr10:99424800-99435000	Weak transcription	Fetal Brain Male	brain
18	chr10:99424800-99437800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr10:99425000-99436800	Weak transcription	Stomach Mucosa	stomach
20	chr10:99426000-99434600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr10:99426600-99444600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
22	chr10:99426800-99444800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
23	chr10:99428000-99436600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr10:99428000-99446000	Weak transcription	Fetal Kidney	kidney
25	chr10:99428600-99435200	Weak transcription	HUVEC	blood vessel
26	chr10:99429600-99443600	Weak transcription	Psoas Muscle	Psoas
27	chr10:99429800-99445400	Weak transcription	Primary hematopoietic stem cells	blood
28	chr10:99430000-99437200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr10:99430600-99434800	Strong transcription	Fetal Intestine Small	intestine
30	chr10:99431000-99440000	Strong transcription	Placenta	Placenta
31	chr10:99432000-99435000	Strong transcription	HSMMtube	muscle
32	chr10:99432000-99438200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
33	chr10:99432600-99436000	Strong transcription	Skeletal Muscle Male	skeletal muscle
34	chr10:99432600-99439400	Strong transcription	Fetal Muscle Trunk	muscle
35	chr10:99432600-99440800	Strong transcription	HepG2	liver
36	chr10:99432800-99435800	Strong transcription	Primary T cells from cord blood	blood
37	chr10:99432800-99435800	Strong transcription	Thymus	Thymus
38	chr10:99432800-99436200	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr10:99432800-99440000	Strong transcription	Rectal Mucosa Donor 31	rectum
40	chr10:99433000-99435000	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr10:99433000-99436000	Strong transcription	Primary B cells from peripheral blood	blood
42	chr10:99433000-99439600	Strong transcription	Duodenum Smooth Muscle	Duodenum
43	chr10:99433200-99434200	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr10:99433200-99434200	Genic enhancers	NHDF-Ad	bronchial
45	chr10:99433200-99434400	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr10:99433200-99434400	Genic enhancers	K562	blood
47	chr10:99433200-99434600	Strong transcription	Brain Anterior Caudate	brain
48	chr10:99433200-99434800	Genic enhancers	HMEC	breast
49	chr10:99433200-99435800	Strong transcription	H1 Cell Line	embryonic stem cell
50	chr10:99433200-99435800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--

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