Variant report

Variant	rs73326524
Chromosome Location	chr10:99541959-99541960
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:99521353..99523999-chr10:99539664..99542040,2	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11556394	1.00[AMR][1000 genomes]
rs56818599	1.00[AMR][1000 genomes]
rs58090494	1.00[AMR][1000 genomes]
rs59403844	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59410931	1.00[AMR][1000 genomes]
rs6584150	1.00[AMR][1000 genomes]
rs7086155	1.00[AMR][1000 genomes]
rs73322513	1.00[AMR][1000 genomes]
rs73322524	1.00[AMR][1000 genomes]
rs73322563	1.00[AMR][1000 genomes]
rs73324603	1.00[AMR][1000 genomes]
rs73324645	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73324684	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73324696	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73326503	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73326520	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73332794	1.00[AMR][1000 genomes]
rs73332796	1.00[AMR][1000 genomes]
rs73334504	1.00[AMR][1000 genomes]
rs73334529	1.00[AMR][1000 genomes]
rs73334558	1.00[AMR][1000 genomes]
rs73334560	1.00[AMR][1000 genomes]
rs73334562	1.00[AMR][1000 genomes]
rs73334566	1.00[AMR][1000 genomes]
rs74155508	1.00[AMR][1000 genomes]
rs7914710	1.00[AMR][1000 genomes]
rs7915140	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817777	chr10:99196035-99558169	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:99537000-99545600	Enhancers	Pancreas	Pancrea
2	chr10:99537200-99542600	Enhancers	Fetal Thymus	thymus
3	chr10:99539600-99543200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
4	chr10:99539800-99543000	Enhancers	Primary T cells fromperipheralblood	blood
5	chr10:99539800-99543000	Enhancers	K562	blood
6	chr10:99540000-99542000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr10:99540000-99542600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
8	chr10:99540000-99542800	Enhancers	Primary hematopoietic stem cells	blood
9	chr10:99540000-99542800	Enhancers	Primary T killer memory cells from peripheral blood	blood
10	chr10:99540000-99543000	Enhancers	Primary T helper cells PMA-I stimulated	--
11	chr10:99540000-99543000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr10:99540200-99542000	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
13	chr10:99540200-99542000	Enhancers	Brain Hippocampus Middle	brain
14	chr10:99540200-99542400	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
15	chr10:99540200-99542600	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr10:99540200-99542800	Enhancers	Fetal Lung	lung
17	chr10:99540200-99543200	Enhancers	NHEK	skin
18	chr10:99540400-99542000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr10:99540400-99542400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
20	chr10:99540400-99542600	Enhancers	Fetal Brain Male	brain
21	chr10:99540400-99542800	Enhancers	Fetal Muscle Leg	muscle
22	chr10:99540400-99543200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr10:99540400-99544600	Genic enhancers	Fetal Intestine Small	intestine
24	chr10:99540600-99542000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr10:99540600-99542000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr10:99540600-99542200	Enhancers	ES-I3 Cell Line	embryonic stem cell
27	chr10:99540600-99542200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
28	chr10:99540600-99542200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr10:99540600-99542200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr10:99540600-99542800	Enhancers	Primary hematopoietic stem cells short term culture	blood
31	chr10:99540800-99542400	Enhancers	HUES48 Cell Line	embryonic stem cell
32	chr10:99540800-99542400	Enhancers	Breast Myoepithelial Primary Cells	Breast
33	chr10:99540800-99542400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
34	chr10:99540800-99542400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr10:99540800-99542600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr10:99540800-99542600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr10:99540800-99542800	Enhancers	Stomach Mucosa	stomach
38	chr10:99540800-99543000	Enhancers	Skeletal Muscle Male	skeletal muscle
39	chr10:99540800-99543200	Enhancers	Fetal Heart	heart
40	chr10:99540800-99543200	Enhancers	Left Ventricle	heart
41	chr10:99540800-99545800	Enhancers	HepG2	liver
42	chr10:99541000-99542000	Enhancers	Brain Substantia Nigra	brain
43	chr10:99541000-99542000	Enhancers	Stomach Smooth Muscle	stomach
44	chr10:99541000-99542200	Enhancers	Lung	lung
45	chr10:99541000-99542400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
46	chr10:99541000-99542800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr10:99541000-99542800	Enhancers	Gastric	stomach
48	chr10:99541000-99548600	Weak transcription	A549	lung
49	chr10:99541200-99542000	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
50	chr10:99541200-99542000	Enhancers	Spleen	Spleen

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