Variant report

Variant	rs73334562
Chromosome Location	chr10:99413256-99413257
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:99408476..99412102-chr10:99412363..99415213,3	MCF-7	breast:
2	chr10:99398855..99401361-chr10:99411720..99414196,2	K562	blood:
3	chr10:99412413..99414707-chr10:99422653..99425791,3	K562	blood:

Variant related genes	Relation type
ENSG00000155252	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11556394	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56818599	1.00[AMR][1000 genomes]
rs58040561	1.00[AMR][1000 genomes]
rs58090494	1.00[AMR][1000 genomes]
rs59403844	1.00[AMR][1000 genomes]
rs59410931	1.00[AMR][1000 genomes]
rs6584150	1.00[AMR][1000 genomes]
rs7086155	1.00[AMR][1000 genomes]
rs73322513	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73322524	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73322563	1.00[AMR][1000 genomes]
rs73324603	1.00[AMR][1000 genomes]
rs73324645	1.00[AMR][1000 genomes]
rs73324684	1.00[AMR][1000 genomes]
rs73324696	1.00[AMR][1000 genomes]
rs73326503	1.00[AMR][1000 genomes]
rs73326520	1.00[AMR][1000 genomes]
rs73326524	1.00[AMR][1000 genomes]
rs73332794	1.00[AMR][1000 genomes]
rs73332796	1.00[AMR][1000 genomes]
rs73334504	1.00[AMR][1000 genomes]
rs73334529	1.00[AMR][1000 genomes]
rs73334558	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73334560	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73334566	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74155508	1.00[AMR][1000 genomes]
rs7914710	1.00[AMR][1000 genomes]
rs7915140	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817777	chr10:99196035-99558169	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv1045292	chr10:99411153-99450861	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:99401800-99415400	Weak transcription	Pancreas	Pancrea
2	chr10:99401800-99443600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr10:99402000-99444600	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr10:99408600-99433400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr10:99409200-99416000	Weak transcription	Small Intestine	intestine
6	chr10:99409200-99423800	Weak transcription	Stomach Mucosa	stomach
7	chr10:99409200-99424000	Weak transcription	Fetal Heart	heart
8	chr10:99409200-99444800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr10:99409400-99445800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr10:99409600-99414200	Genic enhancers	K562	blood
11	chr10:99410200-99431800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr10:99410400-99413400	Strong transcription	Brain Substantia Nigra	brain
13	chr10:99410400-99413400	Strong transcription	Esophagus	oesophagus
14	chr10:99410400-99413600	Strong transcription	Fetal Stomach	stomach
15	chr10:99410400-99414000	Strong transcription	Primary T cells from cord blood	blood
16	chr10:99410400-99414000	Strong transcription	Rectal Mucosa Donor 31	rectum
17	chr10:99410400-99414000	Strong transcription	Thymus	Thymus
18	chr10:99410400-99414200	Strong transcription	Fetal Lung	lung
19	chr10:99410400-99414200	Strong transcription	Left Ventricle	heart
20	chr10:99410400-99414200	Strong transcription	Sigmoid Colon	Sigmoid Colon
21	chr10:99410400-99414200	Strong transcription	Skeletal Muscle Male	skeletal muscle
22	chr10:99410400-99414600	Strong transcription	Brain Hippocampus Middle	brain
23	chr10:99410400-99417000	Strong transcription	Primary B cells from cord blood	blood
24	chr10:99410400-99417200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr10:99410400-99418200	Strong transcription	Fetal Muscle Trunk	muscle
26	chr10:99410400-99418400	Strong transcription	Primary T cells fromperipheralblood	blood
27	chr10:99410400-99418600	Strong transcription	Primary B cells from peripheral blood	blood
28	chr10:99410400-99418800	Strong transcription	Stomach Smooth Muscle	stomach
29	chr10:99410400-99419200	Strong transcription	Fetal Thymus	thymus
30	chr10:99410400-99419400	Strong transcription	Osteobl	bone
31	chr10:99410400-99419600	Strong transcription	Primary T helper cells fromperipheralblood	blood
32	chr10:99410400-99419600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
33	chr10:99410400-99419600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr10:99410400-99419600	Strong transcription	Dnd41	blood
35	chr10:99410400-99419800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr10:99410400-99423400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
37	chr10:99410400-99436200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr10:99410400-99436200	Strong transcription	HUES64 Cell Line	embryonic stem cell
39	chr10:99410600-99413400	Strong transcription	Fetal Brain Female	brain
40	chr10:99410600-99414000	Strong transcription	GM12878-XiMat	blood
41	chr10:99410600-99414000	Strong transcription	HepG2	liver
42	chr10:99410600-99414200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
43	chr10:99410600-99414200	Strong transcription	Brain Angular Gyrus	brain
44	chr10:99410600-99414200	Strong transcription	Brain Inferior Temporal Lobe	brain
45	chr10:99410600-99414200	Strong transcription	Duodenum Smooth Muscle	Duodenum
46	chr10:99410600-99414200	Strong transcription	Rectal Mucosa Donor 29	rectum
47	chr10:99410600-99414400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
48	chr10:99410600-99414400	Strong transcription	NHDF-Ad	bronchial
49	chr10:99410600-99414800	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr10:99410600-99414800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links