Variant report

Variant	rs73334560
Chromosome Location	chr10:99411330-99411331
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:99405048..99407149-chr10:99409697..99412452,2	K562	blood:
2	chr10:99410540..99412927-chr10:99414467..99416749,2	K562	blood:
3	chr10:99410540..99412314-chr10:99414467..99417141,2	K562	blood:
4	chr10:99186873..99189945-chr10:99408246..99411690,3	MCF-7	breast:
5	chr10:99411281..99413189-chr10:99425892..99427506,2	MCF-7	breast:
6	chr1:204263745..204265893-chr10:99410296..99413085,2	MCF-7	breast:
7	chr10:99408476..99412102-chr10:99412363..99415213,3	MCF-7	breast:
8	chr10:99409217..99411944-chr11:65189042..65190939,2	MCF-7	breast:
9	chr10:99410016..99411590-chr10:99416844..99418695,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000171314	Chromatin interaction
ENSG00000245532	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11556394	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56818599	1.00[AMR][1000 genomes]
rs58040561	1.00[AMR][1000 genomes]
rs58090494	1.00[AMR][1000 genomes]
rs59403844	1.00[AMR][1000 genomes]
rs59410931	1.00[AMR][1000 genomes]
rs6584150	1.00[AMR][1000 genomes]
rs7086155	1.00[AMR][1000 genomes]
rs73322513	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73322524	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73322563	1.00[AMR][1000 genomes]
rs73324603	1.00[AMR][1000 genomes]
rs73324645	1.00[AMR][1000 genomes]
rs73324684	1.00[AMR][1000 genomes]
rs73324696	1.00[AMR][1000 genomes]
rs73326503	1.00[AMR][1000 genomes]
rs73326520	1.00[AMR][1000 genomes]
rs73326524	1.00[AMR][1000 genomes]
rs73332794	1.00[AMR][1000 genomes]
rs73332796	1.00[AMR][1000 genomes]
rs73334504	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73334529	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73334558	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73334562	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73334566	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74155508	1.00[AMR][1000 genomes]
rs7914710	1.00[AMR][1000 genomes]
rs7915140	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817777	chr10:99196035-99558169	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv1045292	chr10:99411153-99450861	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:99401800-99415400	Weak transcription	Pancreas	Pancrea
2	chr10:99401800-99443600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr10:99402000-99444600	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr10:99407000-99411800	Genic enhancers	Hela-S3	cervix
5	chr10:99408600-99433400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr10:99409200-99416000	Weak transcription	Small Intestine	intestine
7	chr10:99409200-99423800	Weak transcription	Stomach Mucosa	stomach
8	chr10:99409200-99424000	Weak transcription	Fetal Heart	heart
9	chr10:99409200-99444800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr10:99409400-99445800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr10:99409600-99414200	Genic enhancers	K562	blood
12	chr10:99409800-99411800	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr10:99410000-99412600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr10:99410200-99411800	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr10:99410200-99413200	Strong transcription	iPS-15b Cell Line	embryonic stem cell
16	chr10:99410200-99413200	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr10:99410200-99431800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr10:99410400-99411400	Strong transcription	HUES6 Cell Line	embryonic stem cell
19	chr10:99410400-99411800	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr10:99410400-99411800	Strong transcription	Primary hematopoietic stem cells	blood
21	chr10:99410400-99411800	Strong transcription	Brain Germinal Matrix	brain
22	chr10:99410400-99411800	Genic enhancers	A549	lung
23	chr10:99410400-99412000	Strong transcription	Fetal Brain Male	brain
24	chr10:99410400-99412200	Genic enhancers	Placenta	Placenta
25	chr10:99410400-99413000	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr10:99410400-99413000	Genic enhancers	HMEC	breast
27	chr10:99410400-99413000	Strong transcription	HUVEC	blood vessel
28	chr10:99410400-99413400	Strong transcription	Brain Substantia Nigra	brain
29	chr10:99410400-99413400	Strong transcription	Esophagus	oesophagus
30	chr10:99410400-99413600	Strong transcription	Fetal Stomach	stomach
31	chr10:99410400-99414000	Strong transcription	Primary T cells from cord blood	blood
32	chr10:99410400-99414000	Strong transcription	Rectal Mucosa Donor 31	rectum
33	chr10:99410400-99414000	Strong transcription	Thymus	Thymus
34	chr10:99410400-99414200	Strong transcription	Fetal Lung	lung
35	chr10:99410400-99414200	Strong transcription	Left Ventricle	heart
36	chr10:99410400-99414200	Strong transcription	Sigmoid Colon	Sigmoid Colon
37	chr10:99410400-99414200	Strong transcription	Skeletal Muscle Male	skeletal muscle
38	chr10:99410400-99414600	Strong transcription	Brain Hippocampus Middle	brain
39	chr10:99410400-99417000	Strong transcription	Primary B cells from cord blood	blood
40	chr10:99410400-99417200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr10:99410400-99418200	Strong transcription	Fetal Muscle Trunk	muscle
42	chr10:99410400-99418400	Strong transcription	Primary T cells fromperipheralblood	blood
43	chr10:99410400-99418600	Strong transcription	Primary B cells from peripheral blood	blood
44	chr10:99410400-99418800	Strong transcription	Stomach Smooth Muscle	stomach
45	chr10:99410400-99419200	Strong transcription	Fetal Thymus	thymus
46	chr10:99410400-99419400	Strong transcription	Osteobl	bone
47	chr10:99410400-99419600	Strong transcription	Primary T helper cells fromperipheralblood	blood
48	chr10:99410400-99419600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
49	chr10:99410400-99419600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr10:99410400-99419600	Strong transcription	Dnd41	blood

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