Variant report

Variant	rs73334566
Chromosome Location	chr10:99417476-99417477
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:99410016..99411590-chr10:99416844..99418695,2	MCF-7	breast:
2	chr10:99417090..99419579-chr10:99446704..99449062,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000119986	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11556394	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56818599	1.00[AMR][1000 genomes]
rs58040561	1.00[AMR][1000 genomes]
rs58090494	1.00[AMR][1000 genomes]
rs59403844	1.00[AMR][1000 genomes]
rs59410931	1.00[AMR][1000 genomes]
rs6584150	1.00[AMR][1000 genomes]
rs7086155	1.00[AMR][1000 genomes]
rs73322513	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73322524	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73322563	1.00[AMR][1000 genomes]
rs73324603	1.00[AMR][1000 genomes]
rs73324645	1.00[AMR][1000 genomes]
rs73324684	1.00[AMR][1000 genomes]
rs73324696	1.00[AMR][1000 genomes]
rs73326503	1.00[AMR][1000 genomes]
rs73326520	1.00[AMR][1000 genomes]
rs73326524	1.00[AMR][1000 genomes]
rs73332794	1.00[AMR][1000 genomes]
rs73332796	1.00[AMR][1000 genomes]
rs73334504	1.00[AMR][1000 genomes]
rs73334529	1.00[AMR][1000 genomes]
rs73334558	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73334560	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73334562	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74155508	1.00[AMR][1000 genomes]
rs7914710	1.00[AMR][1000 genomes]
rs7915140	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817777	chr10:99196035-99558169	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv1045292	chr10:99411153-99450861	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:99401800-99443600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr10:99402000-99444600	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr10:99408600-99433400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr10:99409200-99423800	Weak transcription	Stomach Mucosa	stomach
5	chr10:99409200-99424000	Weak transcription	Fetal Heart	heart
6	chr10:99409200-99444800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr10:99409400-99445800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr10:99410200-99431800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr10:99410400-99418200	Strong transcription	Fetal Muscle Trunk	muscle
10	chr10:99410400-99418400	Strong transcription	Primary T cells fromperipheralblood	blood
11	chr10:99410400-99418600	Strong transcription	Primary B cells from peripheral blood	blood
12	chr10:99410400-99418800	Strong transcription	Stomach Smooth Muscle	stomach
13	chr10:99410400-99419200	Strong transcription	Fetal Thymus	thymus
14	chr10:99410400-99419400	Strong transcription	Osteobl	bone
15	chr10:99410400-99419600	Strong transcription	Primary T helper cells fromperipheralblood	blood
16	chr10:99410400-99419600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr10:99410400-99419600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr10:99410400-99419600	Strong transcription	Dnd41	blood
19	chr10:99410400-99419800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr10:99410400-99423400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr10:99410400-99436200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr10:99410400-99436200	Strong transcription	HUES64 Cell Line	embryonic stem cell
23	chr10:99410600-99418000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr10:99410600-99418600	Strong transcription	NH-A	brain
25	chr10:99410600-99419200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr10:99410600-99419600	Strong transcription	Muscle Satellite Cultured Cells	--
27	chr10:99410600-99419800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
28	chr10:99410600-99419800	Strong transcription	Fetal Intestine Large	intestine
29	chr10:99410600-99431200	Strong transcription	HUES48 Cell Line	embryonic stem cell
30	chr10:99410800-99418000	Strong transcription	Duodenum Mucosa	Duodenum
31	chr10:99410800-99419200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr10:99410800-99421400	Strong transcription	Fetal Intestine Small	intestine
33	chr10:99411000-99419000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr10:99411000-99419000	Strong transcription	Skeletal Muscle Female	skeletal muscle
35	chr10:99411000-99437000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr10:99411400-99419000	Strong transcription	Adipose Nuclei	Adipose
37	chr10:99411600-99433400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
38	chr10:99411600-99437800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr10:99411800-99418200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr10:99411800-99418400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
41	chr10:99411800-99419600	Strong transcription	HUES6 Cell Line	embryonic stem cell
42	chr10:99412200-99420000	Strong transcription	Placenta	Placenta
43	chr10:99412600-99424000	Weak transcription	Fetal Brain Male	brain
44	chr10:99412800-99418000	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr10:99412800-99429000	Weak transcription	Primary hematopoietic stem cells	blood
46	chr10:99413000-99419400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr10:99413000-99419800	Strong transcription	HMEC	breast
48	chr10:99413000-99433400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr10:99413200-99419200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr10:99413200-99422200	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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