Variant report

Variant	rs73322524
Chromosome Location	chr10:99438397-99438398
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:99436586..99439016-chr10:99473256..99474925,2	MCF-7	breast:
2	chr10:99438113..99439939-chr10:99491888..99494551,2	K562	blood:

Variant related genes	Relation type
ENSG00000155254	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11556394	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56818599	1.00[AMR][1000 genomes]
rs58040561	1.00[AMR][1000 genomes]
rs58090494	1.00[AMR][1000 genomes]
rs59403844	1.00[AMR][1000 genomes]
rs59410931	1.00[AMR][1000 genomes]
rs6584150	1.00[AMR][1000 genomes]
rs7086155	1.00[AMR][1000 genomes]
rs73322513	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73322563	1.00[AMR][1000 genomes]
rs73324603	1.00[AMR][1000 genomes]
rs73324645	1.00[AMR][1000 genomes]
rs73324684	1.00[AMR][1000 genomes]
rs73324696	1.00[AMR][1000 genomes]
rs73326503	1.00[AMR][1000 genomes]
rs73326520	1.00[AMR][1000 genomes]
rs73326524	1.00[AMR][1000 genomes]
rs73332794	1.00[AMR][1000 genomes]
rs73332796	1.00[AMR][1000 genomes]
rs73334504	1.00[AMR][1000 genomes]
rs73334529	1.00[AMR][1000 genomes]
rs73334558	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73334560	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73334562	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73334566	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74155508	1.00[AMR][1000 genomes]
rs7914710	1.00[AMR][1000 genomes]
rs7915140	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817777	chr10:99196035-99558169	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv1045292	chr10:99411153-99450861	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:99401800-99443600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr10:99402000-99444600	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr10:99409200-99444800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr10:99409400-99445800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr10:99421600-99440400	Strong transcription	Fetal Stomach	stomach
6	chr10:99426600-99444600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr10:99426800-99444800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr10:99428000-99446000	Weak transcription	Fetal Kidney	kidney
9	chr10:99429600-99443600	Weak transcription	Psoas Muscle	Psoas
10	chr10:99429800-99445400	Weak transcription	Primary hematopoietic stem cells	blood
11	chr10:99431000-99440000	Strong transcription	Placenta	Placenta
12	chr10:99432600-99439400	Strong transcription	Fetal Muscle Trunk	muscle
13	chr10:99432600-99440800	Strong transcription	HepG2	liver
14	chr10:99432800-99440000	Strong transcription	Rectal Mucosa Donor 31	rectum
15	chr10:99433000-99439600	Strong transcription	Duodenum Smooth Muscle	Duodenum
16	chr10:99433200-99439800	Strong transcription	Sigmoid Colon	Sigmoid Colon
17	chr10:99433200-99440200	Strong transcription	Adipose Nuclei	Adipose
18	chr10:99433200-99440400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr10:99433200-99440400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr10:99433200-99440400	Strong transcription	NHEK	skin
21	chr10:99433400-99438400	Strong transcription	HUES48 Cell Line	embryonic stem cell
22	chr10:99433400-99438800	Strong transcription	Rectal Smooth Muscle	rectum
23	chr10:99433400-99439800	Strong transcription	Colon Smooth Muscle	Colon
24	chr10:99433400-99440000	Strong transcription	Rectal Mucosa Donor 29	rectum
25	chr10:99433400-99440000	Strong transcription	Stomach Smooth Muscle	stomach
26	chr10:99433400-99440400	Strong transcription	Left Ventricle	heart
27	chr10:99433400-99440400	Strong transcription	Skeletal Muscle Female	skeletal muscle
28	chr10:99433800-99443000	Weak transcription	Right Atrium	heart
29	chr10:99434200-99439800	Strong transcription	Osteobl	bone
30	chr10:99434200-99440200	Strong transcription	Liver	Liver
31	chr10:99434400-99438400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr10:99434400-99439800	Strong transcription	Muscle Satellite Cultured Cells	--
33	chr10:99434400-99440200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr10:99434400-99440200	Strong transcription	NHLF	lung
35	chr10:99434400-99440400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr10:99434600-99441800	Weak transcription	Small Intestine	intestine
37	chr10:99434800-99438800	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
38	chr10:99434800-99440200	Strong transcription	HMEC	breast
39	chr10:99434800-99440200	Strong transcription	HSMM	muscle
40	chr10:99434800-99441800	Weak transcription	Fetal Heart	heart
41	chr10:99435200-99443400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
42	chr10:99435400-99444800	Weak transcription	Primary T helper cells PMA-I stimulated	--
43	chr10:99435400-99446000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
44	chr10:99435600-99440400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr10:99435600-99443400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
46	chr10:99435600-99445000	Weak transcription	NH-A	brain
47	chr10:99435600-99446400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr10:99435800-99444400	Weak transcription	Primary T helper cells fromperipheralblood	blood
49	chr10:99435800-99444600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
50	chr10:99435800-99445000	Weak transcription	Primary T cells from cord blood	blood

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