Variant report

Variant	rs73334558
Chromosome Location	chr10:99410460-99410461
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:99405048..99407149-chr10:99409697..99412452,2	K562	blood:
2	chr10:99186873..99189945-chr10:99408246..99411690,3	MCF-7	breast:
3	chr10:99399058..99403480-chr10:99405420..99411063,9	MCF-7	breast:
4	chr1:204263745..204265893-chr10:99410296..99413085,2	MCF-7	breast:
5	chr10:99408476..99412102-chr10:99412363..99415213,3	MCF-7	breast:
6	chr10:99409217..99411944-chr11:65189042..65190939,2	MCF-7	breast:
7	chr10:99333671..99336639-chr10:99408320..99410860,2	MCF-7	breast:
8	chr10:99410016..99411590-chr10:99416844..99418695,2	MCF-7	breast:
9	chr10:99408792..99411282-chr10:99432665..99436931,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000155252	Chromatin interaction
ENSG00000245532	Chromatin interaction
ENSG00000171314	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11556394	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56818599	1.00[AMR][1000 genomes]
rs58040561	1.00[AMR][1000 genomes]
rs58090494	1.00[AMR][1000 genomes]
rs59403844	1.00[AMR][1000 genomes]
rs59410931	1.00[AMR][1000 genomes]
rs6584150	1.00[AMR][1000 genomes]
rs7086155	1.00[AMR][1000 genomes]
rs73322513	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73322524	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73322563	1.00[AMR][1000 genomes]
rs73324603	1.00[AMR][1000 genomes]
rs73324645	1.00[AMR][1000 genomes]
rs73324684	1.00[AMR][1000 genomes]
rs73324696	1.00[AMR][1000 genomes]
rs73326503	1.00[AMR][1000 genomes]
rs73326520	1.00[AMR][1000 genomes]
rs73326524	1.00[AMR][1000 genomes]
rs73332794	1.00[AMR][1000 genomes]
rs73332796	1.00[AMR][1000 genomes]
rs73334504	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73334529	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73334560	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73334562	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73334566	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74155508	1.00[AMR][1000 genomes]
rs7914710	1.00[AMR][1000 genomes]
rs7915140	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817777	chr10:99196035-99558169	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:99401800-99410800	Weak transcription	Aorta	Aorta
2	chr10:99401800-99411000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr10:99401800-99411200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr10:99401800-99415400	Weak transcription	Pancreas	Pancrea
5	chr10:99401800-99443600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr10:99402000-99410800	Weak transcription	Colonic Mucosa	Colon
7	chr10:99402000-99410800	Weak transcription	Right Ventricle	heart
8	chr10:99402000-99444600	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr10:99405000-99410600	Weak transcription	Fetal Brain Female	brain
10	chr10:99405000-99410600	Weak transcription	Ovary	ovary
11	chr10:99405000-99410800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr10:99405000-99410800	Weak transcription	Liver	Liver
13	chr10:99405000-99411000	Weak transcription	Fetal Kidney	kidney
14	chr10:99405200-99410600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr10:99405200-99410800	Weak transcription	Brain Anterior Caudate	brain
16	chr10:99405800-99410600	Weak transcription	Fetal Muscle Leg	muscle
17	chr10:99406200-99411000	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr10:99407000-99411800	Genic enhancers	Hela-S3	cervix
19	chr10:99407200-99410800	Enhancers	Adipose Nuclei	Adipose
20	chr10:99407200-99410800	Genic enhancers	Fetal Intestine Small	intestine
21	chr10:99408200-99410600	Enhancers	Placenta Amnion	Placenta Amnion
22	chr10:99408200-99410600	Enhancers	HSMMtube	muscle
23	chr10:99408600-99410800	Weak transcription	Spleen	Spleen
24	chr10:99408600-99433400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr10:99408800-99410600	Weak transcription	HepG2	liver
26	chr10:99408800-99410800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr10:99409000-99410600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr10:99409000-99410600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr10:99409000-99410600	Weak transcription	Brain Angular Gyrus	brain
30	chr10:99409000-99410600	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr10:99409000-99410600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr10:99409000-99410600	Weak transcription	Lung	lung
33	chr10:99409000-99410600	Weak transcription	Rectal Smooth Muscle	rectum
34	chr10:99409000-99410800	Weak transcription	Colon Smooth Muscle	Colon
35	chr10:99409000-99410800	Weak transcription	Duodenum Mucosa	Duodenum
36	chr10:99409000-99410800	Weak transcription	Gastric	stomach
37	chr10:99409200-99410600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr10:99409200-99410600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
39	chr10:99409200-99410600	Weak transcription	Duodenum Smooth Muscle	Duodenum
40	chr10:99409200-99410600	Weak transcription	Rectal Mucosa Donor 29	rectum
41	chr10:99409200-99410600	Weak transcription	GM12878-XiMat	blood
42	chr10:99409200-99410800	Weak transcription	H1 Cell Line	embryonic stem cell
43	chr10:99409200-99410800	Weak transcription	Cortex derived primary cultured neurospheres	brain
44	chr10:99409200-99410800	Weak transcription	Brain Cingulate Gyrus	brain
45	chr10:99409200-99411000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
46	chr10:99409200-99416000	Weak transcription	Small Intestine	intestine
47	chr10:99409200-99423800	Weak transcription	Stomach Mucosa	stomach
48	chr10:99409200-99424000	Weak transcription	Fetal Heart	heart
49	chr10:99409200-99444800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
50	chr10:99409400-99410600	Weak transcription	HUES48 Cell Line	embryonic stem cell

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