Variant report

Variant	rs73324645
Chromosome Location	chr10:99507405-99507406
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA3	chr10:99507348-99507843	SH-SY5Y	brain:	n/a	n/a
2	GATA2	chr10:99507368-99508111	SH-SY5Y	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr10:99504743..99508574-chr10:99511202..99514427,4	K562	blood:
2	chr10:99494917..99500697-chr10:99501380..99508176,12	K562	blood:
3	chr10:99503209..99504783-chr10:99507206..99509576,2	MCF-7	breast:
4	chr10:99497440..99500356-chr10:99505732..99507613,3	MCF-7	breast:

Variant related genes	Relation type
ZFYVE27	TF binding region
ENSG00000155256	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11556394	1.00[AMR][1000 genomes]
rs56818599	1.00[AMR][1000 genomes]
rs58040561	1.00[AMR][1000 genomes]
rs58090494	1.00[AMR][1000 genomes]
rs59403844	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59410931	1.00[AMR][1000 genomes]
rs6584150	1.00[AMR][1000 genomes]
rs7086155	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73322513	1.00[AMR][1000 genomes]
rs73322524	1.00[AMR][1000 genomes]
rs73322563	1.00[AMR][1000 genomes]
rs73324603	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73324684	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73324696	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73326503	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73326520	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73326524	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73332794	1.00[AMR][1000 genomes]
rs73332796	1.00[AMR][1000 genomes]
rs73334504	1.00[AMR][1000 genomes]
rs73334529	1.00[AMR][1000 genomes]
rs73334558	1.00[AMR][1000 genomes]
rs73334560	1.00[AMR][1000 genomes]
rs73334562	1.00[AMR][1000 genomes]
rs73334566	1.00[AMR][1000 genomes]
rs74155508	1.00[AMR][1000 genomes]
rs7914710	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7915140	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817777	chr10:99196035-99558169	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv467441	chr10:99472710-99541104	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv552026	chr10:99472710-99541104	Weak transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:99497600-99522600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr10:99498000-99507800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr10:99498200-99509000	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr10:99498200-99520600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr10:99498400-99514800	Strong transcription	Fetal Stomach	stomach
6	chr10:99498400-99517600	Strong transcription	H1 Cell Line	embryonic stem cell
7	chr10:99498400-99519000	Strong transcription	Fetal Intestine Large	intestine
8	chr10:99498400-99519200	Strong transcription	Fetal Muscle Trunk	muscle
9	chr10:99498600-99514800	Strong transcription	Fetal Muscle Leg	muscle
10	chr10:99498600-99517800	Strong transcription	HUES64 Cell Line	embryonic stem cell
11	chr10:99498600-99518000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr10:99498600-99518000	Strong transcription	Fetal Thymus	thymus
13	chr10:99498600-99520200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr10:99498600-99520600	Strong transcription	Osteobl	bone
15	chr10:99498600-99522200	Strong transcription	Rectal Mucosa Donor 29	rectum
16	chr10:99498600-99522400	Strong transcription	Duodenum Mucosa	Duodenum
17	chr10:99498600-99522400	Strong transcription	Monocytes-CD14+_RO01746	blood
18	chr10:99498600-99523000	Strong transcription	Thymus	Thymus
19	chr10:99498600-99523600	Strong transcription	Primary neutrophils fromperipheralblood	blood
20	chr10:99498600-99524800	Weak transcription	Fetal Brain Male	brain
21	chr10:99498800-99522400	Strong transcription	Dnd41	blood
22	chr10:99499000-99509600	Weak transcription	Psoas Muscle	Psoas
23	chr10:99499000-99517800	Strong transcription	Skeletal Muscle Female	skeletal muscle
24	chr10:99499000-99518000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr10:99499200-99517000	Strong transcription	HSMM	muscle
26	chr10:99499200-99518000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr10:99499200-99522800	Strong transcription	Primary monocytes fromperipheralblood	blood
28	chr10:99499200-99523400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
29	chr10:99499400-99519000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr10:99499400-99522000	Strong transcription	Stomach Smooth Muscle	stomach
31	chr10:99499400-99522400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr10:99499600-99519200	Strong transcription	Placenta	Placenta
33	chr10:99499800-99518000	Strong transcription	Rectal Mucosa Donor 31	rectum
34	chr10:99500000-99523000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
35	chr10:99500200-99518000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
36	chr10:99500400-99522000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
37	chr10:99500600-99523200	Strong transcription	Brain Germinal Matrix	brain
38	chr10:99500800-99507800	Weak transcription	Stomach Mucosa	stomach
39	chr10:99500800-99517800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr10:99500800-99518800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr10:99501000-99508000	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr10:99501200-99517600	Strong transcription	Primary T helper cells PMA-I stimulated	--
43	chr10:99501800-99517000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
44	chr10:99502000-99513200	Strong transcription	NHDF-Ad	bronchial
45	chr10:99502000-99517200	Strong transcription	HepG2	liver
46	chr10:99502000-99517600	Strong transcription	Rectal Smooth Muscle	rectum
47	chr10:99502000-99517800	Strong transcription	HUES48 Cell Line	embryonic stem cell
48	chr10:99502000-99517800	Strong transcription	HUES6 Cell Line	embryonic stem cell
49	chr10:99502000-99518000	Strong transcription	Duodenum Smooth Muscle	Duodenum
50	chr10:99502000-99522800	Strong transcription	Primary B cells from peripheral blood	blood

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