Variant report

Variant	rs7915140
Chromosome Location	chr10:99483186-99483187
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:99476839..99480454-chr10:99481730..99484335,3	K562	blood:
2	chr10:99476464..99480454-chr10:99480682..99484335,5	K562	blood:
3	chr10:99482956..99487048-chr10:99495082..99498802,5	MCF-7	breast:
4	chr10:99453167..99456085-chr10:99480960..99483700,2	MCF-7	breast:
5	chr10:99470365..99472980-chr10:99481992..99484603,2	K562	blood:
6	chr10:99482033..99484147-chr10:99490073..99491810,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000155256	Chromatin interaction
ENSG00000155254	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11556394	1.00[AMR][1000 genomes]
rs12259524	1.00[TSI][hapmap]
rs2275588	1.00[TSI][hapmap]
rs56818599	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58040561	1.00[AMR][1000 genomes]
rs58090494	1.00[AMR][1000 genomes]
rs59403844	1.00[AMR][1000 genomes]
rs59410931	1.00[AMR][1000 genomes]
rs6584150	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7086155	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73322513	1.00[AMR][1000 genomes]
rs73322524	1.00[AMR][1000 genomes]
rs73322563	1.00[AMR][1000 genomes]
rs73324603	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73324634	0.82[AFR][1000 genomes]
rs73324645	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73324684	1.00[AMR][1000 genomes]
rs73324696	1.00[AMR][1000 genomes]
rs73326503	1.00[AMR][1000 genomes]
rs73326520	1.00[AMR][1000 genomes]
rs73326524	1.00[AMR][1000 genomes]
rs73332794	1.00[AMR][1000 genomes]
rs73332796	1.00[AMR][1000 genomes]
rs73334504	1.00[AMR][1000 genomes]
rs73334529	1.00[AMR][1000 genomes]
rs73334558	1.00[AMR][1000 genomes]
rs73334560	1.00[AMR][1000 genomes]
rs73334562	1.00[AMR][1000 genomes]
rs73334566	1.00[AMR][1000 genomes]
rs74155508	1.00[AMR][1000 genomes]
rs7912825	1.00[TSI][hapmap]
rs7914710	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817777	chr10:99196035-99558169	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv467441	chr10:99472710-99541104	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv552026	chr10:99472710-99541104	Weak transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
4	nsv519864	chr10:99478081-99486644	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:99476200-99486600	Weak transcription	Ovary	ovary
2	chr10:99476600-99486200	Weak transcription	HUVEC	blood vessel
3	chr10:99477200-99486200	Weak transcription	NH-A	brain
4	chr10:99478400-99486400	Weak transcription	Aorta	Aorta
5	chr10:99478800-99486600	Weak transcription	HSMMtube	muscle
6	chr10:99478800-99496400	Weak transcription	Primary hematopoietic stem cells	blood
7	chr10:99479000-99484000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr10:99479000-99484000	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr10:99479000-99486200	Weak transcription	Fetal Heart	heart
10	chr10:99479200-99483800	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr10:99479200-99484000	Weak transcription	NHLF	lung
12	chr10:99479200-99486200	Weak transcription	Adipose Nuclei	Adipose
13	chr10:99479200-99486400	Weak transcription	Liver	Liver
14	chr10:99479400-99491200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr10:99479600-99484000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr10:99479600-99484000	Weak transcription	A549	lung
17	chr10:99479600-99484000	Weak transcription	K562	blood
18	chr10:99479600-99484200	Weak transcription	Primary neutrophils fromperipheralblood	blood
19	chr10:99479600-99486200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr10:99479600-99486200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr10:99479600-99486200	Weak transcription	Rectal Smooth Muscle	rectum
22	chr10:99479600-99486400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr10:99479600-99486400	Weak transcription	Brain Substantia Nigra	brain
24	chr10:99479600-99486400	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr10:99479600-99486400	Weak transcription	Fetal Lung	lung
26	chr10:99479600-99486400	Weak transcription	Fetal Muscle Leg	muscle
27	chr10:99479600-99486400	Weak transcription	HSMM	muscle
28	chr10:99479600-99487000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr10:99479800-99484000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr10:99479800-99484000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr10:99479800-99484000	Weak transcription	Muscle Satellite Cultured Cells	--
32	chr10:99479800-99484000	Weak transcription	HMEC	breast
33	chr10:99479800-99484000	Weak transcription	Osteobl	bone
34	chr10:99479800-99486200	Weak transcription	HUES6 Cell Line	embryonic stem cell
35	chr10:99479800-99486200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
36	chr10:99479800-99486200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
37	chr10:99479800-99486200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr10:99479800-99486200	Weak transcription	Colon Smooth Muscle	Colon
39	chr10:99479800-99486200	Weak transcription	Placenta Amnion	Placenta Amnion
40	chr10:99480000-99483800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr10:99480000-99484000	Weak transcription	Hela-S3	cervix
42	chr10:99480000-99484000	Weak transcription	NHDF-Ad	bronchial
43	chr10:99480200-99484000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr10:99481400-99483400	Enhancers	Rectal Mucosa Donor 29	rectum
45	chr10:99481600-99486600	Weak transcription	Duodenum Mucosa	Duodenum
46	chr10:99481800-99484800	Enhancers	Rectal Mucosa Donor 31	rectum
47	chr10:99482200-99483200	Enhancers	Placenta	Placenta
48	chr10:99482200-99484000	Enhancers	Colonic Mucosa	Colon
49	chr10:99482200-99484200	Enhancers	Sigmoid Colon	Sigmoid Colon
50	chr10:99482400-99484000	Weak transcription	Stomach Smooth Muscle	stomach

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