Variant report

Variant	rs73334504
Chromosome Location	chr10:99382170-99382171
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:99380900..99383995-chr10:99384266..99387873,3	K562	blood:
2	chr10:99381787..99384319-chr10:99400957..99402484,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-HOGA1-1	chr10:99380649-99382516	ENSG00000250201

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11556394	1.00[AMR][1000 genomes]
rs41290450	1.00[EUR][1000 genomes]
rs56818599	1.00[AMR][1000 genomes]
rs58040561	1.00[AMR][1000 genomes]
rs58090494	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59403844	1.00[AMR][1000 genomes]
rs59410931	1.00[AMR][1000 genomes]
rs6584150	1.00[AMR][1000 genomes]
rs7086155	1.00[AMR][1000 genomes]
rs73322513	1.00[AMR][1000 genomes]
rs73322524	1.00[AMR][1000 genomes]
rs73322563	1.00[AMR][1000 genomes]
rs73324603	1.00[AMR][1000 genomes]
rs73324645	1.00[AMR][1000 genomes]
rs73324684	1.00[AMR][1000 genomes]
rs73324696	1.00[AMR][1000 genomes]
rs73326503	1.00[AMR][1000 genomes]
rs73326520	1.00[AMR][1000 genomes]
rs73326524	1.00[AMR][1000 genomes]
rs73332794	1.00[AMR][1000 genomes]
rs73332796	1.00[AMR][1000 genomes]
rs73334529	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73334558	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73334560	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73334562	1.00[AMR][1000 genomes]
rs73334566	1.00[AMR][1000 genomes]
rs74155508	1.00[AMR][1000 genomes]
rs7914710	1.00[AMR][1000 genomes]
rs7915140	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817777	chr10:99196035-99558169	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:99361800-99392200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr10:99368000-99392200	Weak transcription	Osteobl	bone
3	chr10:99371000-99392200	Weak transcription	Fetal Lung	lung
4	chr10:99371600-99392200	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr10:99371600-99392600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr10:99371800-99392200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr10:99372200-99390600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr10:99372200-99392400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr10:99372400-99382800	Weak transcription	Liver	Liver
10	chr10:99372400-99391200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr10:99372400-99392200	Weak transcription	NHEK	skin
12	chr10:99372400-99392400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr10:99372400-99392400	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr10:99372400-99392400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr10:99372600-99382200	Weak transcription	Fetal Brain Male	brain
16	chr10:99374200-99392400	Weak transcription	Primary hematopoietic stem cells	blood
17	chr10:99374600-99392200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr10:99375200-99392200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr10:99376200-99391600	Weak transcription	Brain Cingulate Gyrus	brain
20	chr10:99376400-99382200	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr10:99376400-99392600	Weak transcription	Lung	lung
22	chr10:99376600-99382800	Weak transcription	Fetal Intestine Large	intestine
23	chr10:99376600-99382800	Weak transcription	Fetal Intestine Small	intestine
24	chr10:99376600-99392400	Weak transcription	Fetal Muscle Trunk	muscle
25	chr10:99376800-99392200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr10:99377000-99390600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr10:99377000-99392400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr10:99377000-99392400	Weak transcription	Brain Substantia Nigra	brain
29	chr10:99377200-99384200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr10:99377200-99387600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr10:99377200-99392200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr10:99377400-99390400	Weak transcription	Brain Germinal Matrix	brain
33	chr10:99377400-99392400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr10:99378400-99383000	Weak transcription	Pancreas	Pancrea
35	chr10:99378400-99387000	Weak transcription	Fetal Stomach	stomach
36	chr10:99378600-99390600	Weak transcription	Fetal Muscle Leg	muscle
37	chr10:99378600-99392200	Weak transcription	Cortex derived primary cultured neurospheres	brain
38	chr10:99378600-99392200	Weak transcription	Brain Angular Gyrus	brain
39	chr10:99378600-99392400	Weak transcription	Brain Anterior Caudate	brain
40	chr10:99378600-99392400	Weak transcription	Stomach Smooth Muscle	stomach
41	chr10:99378800-99391800	Weak transcription	Fetal Brain Female	brain
42	chr10:99378800-99392400	Weak transcription	Brain Inferior Temporal Lobe	brain
43	chr10:99379000-99392200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr10:99379000-99392400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
45	chr10:99379600-99387000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr10:99379600-99391400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
47	chr10:99379600-99392200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr10:99381200-99384600	Enhancers	HepG2	liver
49	chr10:99381800-99387200	Weak transcription	K562	blood

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