Variant report

Variant	rs6584150
Chromosome Location	chr10:99489655-99489656
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:99488183..99489718-chr10:99490230..99493190,2	MCF-7	breast:
2	chr10:99466947..99470987-chr10:99489059..99494674,5	MCF-7	breast:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11556394	1.00[AMR][1000 genomes]
rs56818599	1.00[AMR][1000 genomes]
rs58040561	1.00[AMR][1000 genomes]
rs58090494	1.00[AMR][1000 genomes]
rs59403844	1.00[AMR][1000 genomes]
rs59410931	1.00[AMR][1000 genomes]
rs7086155	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73322513	1.00[AMR][1000 genomes]
rs73322524	1.00[AMR][1000 genomes]
rs73322563	1.00[AMR][1000 genomes]
rs73324603	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73324645	1.00[AMR][1000 genomes]
rs73324684	1.00[AMR][1000 genomes]
rs73324696	1.00[AMR][1000 genomes]
rs73326503	1.00[AMR][1000 genomes]
rs73326520	1.00[AMR][1000 genomes]
rs73326524	1.00[AMR][1000 genomes]
rs73332794	1.00[AMR][1000 genomes]
rs73332796	1.00[AMR][1000 genomes]
rs73334504	1.00[AMR][1000 genomes]
rs73334529	1.00[AMR][1000 genomes]
rs73334558	1.00[AMR][1000 genomes]
rs73334560	1.00[AMR][1000 genomes]
rs73334562	1.00[AMR][1000 genomes]
rs73334566	1.00[AMR][1000 genomes]
rs74155508	1.00[AMR][1000 genomes]
rs7914710	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7915140	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817777	chr10:99196035-99558169	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv467441	chr10:99472710-99541104	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv552026	chr10:99472710-99541104	Weak transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:99478800-99496400	Weak transcription	Primary hematopoietic stem cells	blood
2	chr10:99479400-99491200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr10:99486800-99491200	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr10:99486800-99491200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr10:99486800-99491200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr10:99486800-99491200	Weak transcription	Brain Substantia Nigra	brain
7	chr10:99486800-99491200	Weak transcription	NHLF	lung
8	chr10:99486800-99491400	Weak transcription	HSMM	muscle
9	chr10:99486800-99491600	Weak transcription	HSMMtube	muscle
10	chr10:99486800-99496000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr10:99486800-99496200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr10:99486800-99496400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr10:99486800-99496400	Weak transcription	Duodenum Mucosa	Duodenum
14	chr10:99486800-99496400	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr10:99486800-99496400	Weak transcription	Pancreas	Pancrea
16	chr10:99486800-99496600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr10:99487000-99491200	Weak transcription	Stomach Smooth Muscle	stomach
18	chr10:99487000-99491200	Weak transcription	NHDF-Ad	bronchial
19	chr10:99487000-99491600	Weak transcription	HMEC	breast
20	chr10:99487000-99491800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr10:99487000-99496000	Weak transcription	K562	blood
22	chr10:99487000-99496400	Weak transcription	Brain Anterior Caudate	brain
23	chr10:99487000-99496400	Weak transcription	Colon Smooth Muscle	Colon
24	chr10:99487000-99496400	Weak transcription	A549	lung
25	chr10:99487200-99491200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr10:99487200-99491200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr10:99487200-99491400	Weak transcription	Osteobl	bone
28	chr10:99487200-99496400	Weak transcription	NHEK	skin
29	chr10:99487200-99496600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr10:99487600-99491200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr10:99487600-99496000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
32	chr10:99489200-99496200	Weak transcription	Monocytes-CD14+_RO01746	blood

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