Variant report

Variant	rs73324603
Chromosome Location	chr10:99476135-99476136
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:99443080..99453237-chr10:99471420..99478243,12	MCF-7	breast:
2	chr10:99472128..99477527-chr10:99495091..99498402,11	MCF-7	breast:
3	chr10:99444102..99447131-chr10:99475724..99478855,3	MCF-7	breast:
4	chr10:99443212..99444968-chr10:99474818..99476540,2	K562	blood:

Variant related genes	Relation type
ENSG00000119986	Chromatin interaction
ENSG00000155256	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11556394	1.00[AMR][1000 genomes]
rs56818599	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58040561	1.00[AMR][1000 genomes]
rs58090494	1.00[AMR][1000 genomes]
rs59403844	1.00[AMR][1000 genomes]
rs59410931	1.00[AMR][1000 genomes]
rs6584150	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7086155	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73322513	1.00[AMR][1000 genomes]
rs73322524	1.00[AMR][1000 genomes]
rs73322563	1.00[AMR][1000 genomes]
rs73324634	0.82[AFR][1000 genomes]
rs73324645	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73324684	1.00[AMR][1000 genomes]
rs73324696	1.00[AMR][1000 genomes]
rs73326503	1.00[AMR][1000 genomes]
rs73326520	1.00[AMR][1000 genomes]
rs73326524	1.00[AMR][1000 genomes]
rs73332794	1.00[AMR][1000 genomes]
rs73332796	1.00[AMR][1000 genomes]
rs73334504	1.00[AMR][1000 genomes]
rs73334529	1.00[AMR][1000 genomes]
rs73334558	1.00[AMR][1000 genomes]
rs73334560	1.00[AMR][1000 genomes]
rs73334562	1.00[AMR][1000 genomes]
rs73334566	1.00[AMR][1000 genomes]
rs74155508	1.00[AMR][1000 genomes]
rs7914710	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7915140	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817777	chr10:99196035-99558169	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv467441	chr10:99472710-99541104	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv552026	chr10:99472710-99541104	Weak transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:99473000-99476200	Active TSS	Aorta	Aorta
2	chr10:99473800-99479000	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr10:99474400-99477800	Weak transcription	Liver	Liver
4	chr10:99474600-99476200	Flanking Active TSS	NH-A	brain
5	chr10:99474600-99476400	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr10:99474800-99476200	Flanking Active TSS	H1 Cell Line	embryonic stem cell
7	chr10:99474800-99476200	Flanking Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr10:99474800-99476200	Flanking Active TSS	Rectal Smooth Muscle	rectum
9	chr10:99474800-99476200	Flanking Active TSS	NHLF	lung
10	chr10:99474800-99476400	Transcr. at gene 5' and 3'	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr10:99474800-99476600	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
12	chr10:99474800-99477400	Weak transcription	Gastric	stomach
13	chr10:99474800-99478000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr10:99474800-99478000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr10:99475000-99476200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr10:99475000-99476400	Enhancers	Right Atrium	heart
17	chr10:99475000-99477000	Enhancers	Fetal Heart	heart
18	chr10:99475000-99477200	Weak transcription	Brain Angular Gyrus	brain
19	chr10:99475000-99478000	Weak transcription	Small Intestine	intestine
20	chr10:99475000-99479400	Weak transcription	Fetal Kidney	kidney
21	chr10:99475200-99476200	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
22	chr10:99475200-99476200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
23	chr10:99475200-99476200	Enhancers	Ovary	ovary
24	chr10:99475200-99476400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr10:99475200-99476400	Enhancers	Primary monocytes fromperipheralblood	blood
26	chr10:99475200-99476400	Enhancers	Adipose Nuclei	Adipose
27	chr10:99475200-99476400	Enhancers	Dnd41	blood
28	chr10:99475200-99476600	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
29	chr10:99475200-99476800	Transcr. at gene 5' and 3'	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr10:99475200-99476800	Enhancers	Stomach Mucosa	stomach
31	chr10:99475200-99477000	Weak transcription	Left Ventricle	heart
32	chr10:99475200-99477000	Enhancers	Rectal Mucosa Donor 31	rectum
33	chr10:99475200-99477200	Weak transcription	Brain Substantia Nigra	brain
34	chr10:99475200-99477200	Enhancers	Placenta Amnion	Placenta Amnion
35	chr10:99475200-99477400	Weak transcription	Brain Cingulate Gyrus	brain
36	chr10:99475200-99477400	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr10:99475200-99477400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
38	chr10:99475200-99477600	Weak transcription	Lung	lung
39	chr10:99475200-99478000	Weak transcription	Right Ventricle	heart
40	chr10:99475200-99478200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
41	chr10:99475200-99478200	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr10:99475200-99478200	Weak transcription	Pancreas	Pancrea
43	chr10:99475400-99476200	Enhancers	Brain Germinal Matrix	brain
44	chr10:99475400-99476200	Active TSS	Fetal Brain Female	brain
45	chr10:99475400-99476200	Enhancers	Monocytes-CD14+_RO01746	blood
46	chr10:99475400-99476400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr10:99475400-99476600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr10:99475400-99477000	Transcr. at gene 5' and 3'	Muscle Satellite Cultured Cells	--
49	chr10:99475400-99477400	Weak transcription	Spleen	Spleen
50	chr10:99475400-99478000	Weak transcription	H9 Cell Line	embryonic stem cell

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