The 2.0 version of rSNPBase

Variant report

Variant rs71476717
Chromosome Location chr15:55621038-55621039
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:107 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr15:55611800-55622400 Weak transcription Left Ventricle heart
2 chr15:55611800-55622400 Weak transcription Lung lung
3 chr15:55611800-55623200 Weak transcription Spleen Spleen
4 chr15:55611800-55623400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
5 chr15:55611800-55629600 Weak transcription Pancreas Pancrea
6 chr15:55611800-55640000 Weak transcription Gastric stomach
7 chr15:55611800-55699400 Weak transcription Colonic Mucosa Colon
8 chr15:55612000-55622200 Weak transcription Esophagus oesophagus
9 chr15:55612000-55622200 Weak transcription Rectal Smooth Muscle rectum
10 chr15:55612000-55622400 Weak transcription Fetal Muscle Trunk muscle
11 chr15:55612000-55628400 Weak transcription Fetal Brain Male brain
12 chr15:55612000-55629800 Weak transcription Pancreatic Islets Pancreatic Islet
13 chr15:55612000-55630600 Weak transcription Ovary ovary
14 chr15:55612000-55635400 Weak transcription Fetal Brain Female brain
15 chr15:55612000-55636000 Weak transcription H1 Cell Line embryonic stem cell
16 chr15:55612000-55636000 Weak transcription Brain Germinal Matrix brain
17 chr15:55612000-55636400 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
18 chr15:55612000-55665000 Weak transcription Skeletal Muscle Male skeletal muscle
19 chr15:55612000-55671000 Weak transcription Right Ventricle heart
20 chr15:55612000-55671000 Weak transcription Small Intestine intestine
21 chr15:55612400-55623000 Weak transcription Cortex derived primary cultured neurospheres brain
22 chr15:55612400-55623400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
23 chr15:55612400-55623400 Weak transcription Fetal Muscle Leg muscle
24 chr15:55612400-55625400 Weak transcription Skeletal Muscle Female skeletal muscle
25 chr15:55612400-55627600 Weak transcription Placenta Placenta
26 chr15:55612400-55628200 Weak transcription Fetal Adrenal Gland Adrenal Gland
27 chr15:55612400-55631000 Weak transcription HSMMtube muscle
28 chr15:55612400-55635600 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
29 chr15:55612600-55622400 Weak transcription Brain Anterior Caudate brain
30 chr15:55612600-55622400 Weak transcription Brain Hippocampus Middle brain
31 chr15:55612600-55622400 Weak transcription Duodenum Smooth Muscle Duodenum
32 chr15:55612600-55622800 Weak transcription Brain Cingulate Gyrus brain
33 chr15:55612600-55623000 Weak transcription Rectal Mucosa Donor 29 rectum
34 chr15:55612600-55623000 Weak transcription Thymus Thymus
35 chr15:55612600-55623200 Weak transcription Brain Inferior Temporal Lobe brain
36 chr15:55612600-55627200 Weak transcription Fetal Lung lung
37 chr15:55612600-55629600 Weak transcription HSMM muscle
38 chr15:55612600-55629800 Weak transcription Brain Substantia Nigra brain
39 chr15:55612600-55630000 Weak transcription Brain Angular Gyrus brain
40 chr15:55612600-55640400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
41 chr15:55612600-55650200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
42 chr15:55612600-55663600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
43 chr15:55612600-55675600 Weak transcription Aorta Aorta
44 chr15:55612800-55621800 Weak transcription Primary T helper 17 cells PMA-I stimulated --
45 chr15:55612800-55622600 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
46 chr15:55612800-55623200 Weak transcription NHDF-Ad bronchial
47 chr15:55612800-55623400 Weak transcription Osteobl bone
48 chr15:55612800-55629800 Weak transcription Fetal Kidney kidney
49 chr15:55612800-55631400 Weak transcription NH-A brain
50 chr15:55612800-55635800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin

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Last update: Aug 31, 2015