The 2.0 version of rSNPBase

Variant report

Variant rs12899120
Chromosome Location chr15:55570323-55570324
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:63 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr15:55520800-55574800 Weak transcription Stomach Smooth Muscle stomach
2 chr15:55542400-55581000 Weak transcription Fetal Intestine Small intestine
3 chr15:55547800-55571400 Weak transcription Aorta Aorta
4 chr15:55548600-55574800 Weak transcription Left Ventricle heart
5 chr15:55549200-55571600 Weak transcription HMEC breast
6 chr15:55550000-55571400 Weak transcription Sigmoid Colon Sigmoid Colon
7 chr15:55553200-55581000 Weak transcription Fetal Intestine Large intestine
8 chr15:55559800-55571200 Weak transcription Pancreatic Islets Pancreatic Islet
9 chr15:55560200-55571200 Weak transcription NHDF-Ad bronchial
10 chr15:55560200-55574800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
11 chr15:55560200-55575400 Weak transcription Thymus Thymus
12 chr15:55560400-55571800 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
13 chr15:55561400-55571400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
14 chr15:55561400-55571400 Weak transcription Pancreas Pancrea
15 chr15:55561600-55576600 Weak transcription Liver Liver
16 chr15:55563200-55571400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
17 chr15:55563800-55574800 Weak transcription Lung lung
18 chr15:55564000-55571000 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
19 chr15:55564200-55571400 Weak transcription Stomach Mucosa stomach
20 chr15:55565000-55574800 Enhancers Primary monocytes fromperipheralblood blood
21 chr15:55567200-55572800 Enhancers Primary T killer naive cells fromperipheralblood blood
22 chr15:55567400-55570800 Enhancers Primary B cells from cord blood blood
23 chr15:55567400-55571800 Enhancers Primary T helper memory cells from peripheral blood 2 blood
24 chr15:55567600-55572600 Enhancers Primary B cells from peripheral blood blood
25 chr15:55567800-55572600 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
26 chr15:55567800-55580800 Weak transcription Fetal Stomach stomach
27 chr15:55568400-55570400 Flanking Active TSS GM12878-XiMat blood
28 chr15:55568400-55574800 Enhancers Primary Natural Killer cells fromperipheralblood blood
29 chr15:55568600-55570400 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Male --
30 chr15:55568600-55570600 Enhancers Rectal Mucosa Donor 29 rectum
31 chr15:55568600-55572600 Enhancers Primary hematopoietic stem cells blood
32 chr15:55569000-55570400 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
33 chr15:55569000-55570400 Genic enhancers K562 blood
34 chr15:55569400-55578200 Weak transcription Fetal Kidney kidney
35 chr15:55569600-55570400 Flanking Active TSS Primary T helper 17 cells PMA-I stimulated --
36 chr15:55569600-55570400 Enhancers Primary mononuclear cells fromperipheralblood Blood
37 chr15:55569800-55570600 Enhancers Hela-S3 cervix
38 chr15:55569800-55572600 Enhancers Primary T cells effector/memory enriched fromperipheralblood blood
39 chr15:55569800-55572600 Enhancers HUVEC blood vessel
40 chr15:55570000-55571400 Weak transcription Rectal Mucosa Donor 31 rectum
41 chr15:55570000-55571400 Weak transcription Spleen Spleen
42 chr15:55570000-55571600 Weak transcription NHLF lung
43 chr15:55570000-55571800 Weak transcription Osteobl bone
44 chr15:55570000-55572600 Enhancers Primary T cells fromperipheralblood blood
45 chr15:55570000-55574200 Weak transcription Right Atrium heart
46 chr15:55570200-55571200 Enhancers Primary neutrophils fromperipheralblood blood
47 chr15:55570200-55571200 Weak transcription Fetal Adrenal Gland Adrenal Gland
48 chr15:55570200-55571400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
49 chr15:55570200-55571400 Weak transcription Breast Myoepithelial Primary Cells Breast
50 chr15:55570200-55571400 Enhancers Primary T helper memory cells from peripheral blood 1 blood

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Last update: Aug 31, 2015