Variant report

Variant	rs35720996
Chromosome Location	chr15:55581774-55581775
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:55484699..55490442-chr15:55579270..55584640,8	K562	blood:
2	chr15:55579295..55584870-chr15:55607881..55612970,10	K562	blood:
3	chr15:55540071..55542542-chr15:55580150..55582152,2	K562	blood:
4	chr15:55485508..55492313-chr15:55579801..55583590,12	K562	blood:
5	chr15:55580259..55584808-chr15:55609765..55612829,5	K562	blood:
6	chr15:55579894..55582757-chr15:55689915..55691723,2	K562	blood:
7	chr15:55580643..55583951-chr15:55698978..55701737,3	K562	blood:
8	chr15:55509907..55510441-chr15:55581136..55581807,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000260916	Chromatin interaction
ENSG00000137876	Chromatin interaction
ENSG00000069974	Chromatin interaction
ENSG00000069943	Chromatin interaction
ENSG00000261652	Chromatin interaction
ENSG00000225973	Chromatin interaction

Extended variants
information (count: 120 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:106)

rs_ID	r²[population]
rs10518810	1.00[ASN][1000 genomes]
rs11732	1.00[ASN][1000 genomes]
rs12101327	1.00[ASN][1000 genomes]
rs12148255	1.00[ASN][1000 genomes]
rs12899120	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12901464	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12902233	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12903378	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12907135	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12909207	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12911948	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12915831	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13329586	1.00[ASN][1000 genomes]
rs16953240	1.00[ASN][1000 genomes]
rs16976307	1.00[ASN][1000 genomes]
rs16976314	1.00[ASN][1000 genomes]
rs2414412	1.00[ASN][1000 genomes]
rs28378485	1.00[ASN][1000 genomes]
rs28413009	1.00[ASN][1000 genomes]
rs28483325	1.00[ASN][1000 genomes]
rs28636929	1.00[ASN][1000 genomes]
rs28653717	1.00[ASN][1000 genomes]
rs3203152	1.00[ASN][1000 genomes]
rs34473609	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34482650	1.00[ASN][1000 genomes]
rs34659706	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34855466	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35396030	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs35768022	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs35879962	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35928893	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36119525	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4294762	1.00[ASN][1000 genomes]
rs55706848	1.00[ASN][1000 genomes]
rs56340826	1.00[ASN][1000 genomes]
rs56760921	1.00[ASN][1000 genomes]
rs57094422	0.86[ASN][1000 genomes]
rs57412310	1.00[ASN][1000 genomes]
rs57489605	1.00[ASN][1000 genomes]
rs57648583	1.00[ASN][1000 genomes]
rs57809907	1.00[ASN][1000 genomes]
rs58053176	1.00[ASN][1000 genomes]
rs58220352	1.00[ASN][1000 genomes]
rs58447274	1.00[ASN][1000 genomes]
rs58507025	1.00[ASN][1000 genomes]
rs58550265	1.00[ASN][1000 genomes]
rs58581371	1.00[ASN][1000 genomes]
rs58697860	1.00[ASN][1000 genomes]
rs58734748	1.00[ASN][1000 genomes]
rs58743089	1.00[ASN][1000 genomes]
rs59228226	1.00[ASN][1000 genomes]
rs59562815	1.00[ASN][1000 genomes]
rs60003039	1.00[ASN][1000 genomes]
rs60071399	1.00[ASN][1000 genomes]
rs60439248	1.00[ASN][1000 genomes]
rs60561373	1.00[ASN][1000 genomes]
rs60755763	1.00[ASN][1000 genomes]
rs60925254	1.00[ASN][1000 genomes]
rs61069460	1.00[ASN][1000 genomes]
rs6493780	1.00[ASN][1000 genomes]
rs6493781	1.00[ASN][1000 genomes]
rs71476714	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71476716	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71476717	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71476718	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs71476719	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7161981	1.00[ASN][1000 genomes]
rs7162724	1.00[ASN][1000 genomes]
rs7164158	1.00[ASN][1000 genomes]
rs7164895	1.00[ASN][1000 genomes]
rs7164984	1.00[ASN][1000 genomes]
rs7168455	1.00[ASN][1000 genomes]
rs7168882	1.00[ASN][1000 genomes]
rs7169460	1.00[ASN][1000 genomes]
rs7170157	1.00[ASN][1000 genomes]
rs7170970	1.00[ASN][1000 genomes]
rs7173562	1.00[ASN][1000 genomes]
rs7176013	1.00[ASN][1000 genomes]
rs7177888	1.00[ASN][1000 genomes]
rs7181226	1.00[ASN][1000 genomes]
rs7181805	1.00[ASN][1000 genomes]
rs7181999	1.00[ASN][1000 genomes]
rs73406912	1.00[ASN][1000 genomes]
rs73406921	1.00[ASN][1000 genomes]
rs73406928	1.00[ASN][1000 genomes]
rs73406986	1.00[ASN][1000 genomes]
rs73408827	1.00[ASN][1000 genomes]
rs73421633	1.00[ASN][1000 genomes]
rs73421665	1.00[ASN][1000 genomes]
rs74015572	1.00[ASN][1000 genomes]
rs8023354	1.00[ASN][1000 genomes]
rs8026454	1.00[ASN][1000 genomes]
rs8027135	0.86[ASN][1000 genomes]
rs8028482	1.00[ASN][1000 genomes]
rs8029077	1.00[ASN][1000 genomes]
rs8029258	1.00[ASN][1000 genomes]
rs8031507	1.00[ASN][1000 genomes]
rs8031625	0.86[ASN][1000 genomes]
rs8034029	1.00[ASN][1000 genomes]
rs8039224	1.00[ASN][1000 genomes]
rs8040840	1.00[ASN][1000 genomes]
rs8041044	1.00[ASN][1000 genomes]
rs8041349	1.00[ASN][1000 genomes]
rs8041382	1.00[ASN][1000 genomes]
rs8041885	1.00[ASN][1000 genomes]
rs8042642	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042741	chr15:55068022-55622497	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv917323	chr15:55290499-56041334	Genic enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
3	nsv1043789	chr15:55400872-56092454	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
4	nsv1036924	chr15:55527874-55616480	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	nsv1051046	chr15:55529291-55821973	Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
6	nsv569522	chr15:55532211-55611126	Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
7	nsv904241	chr15:55534342-55611126	Weak transcription Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
8	nsv1036173	chr15:55547689-55812194	Flanking Active TSS Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
9	nsv542391	chr15:55547689-55812194	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
10	nsv904242	chr15:55550755-55611126	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
11	nsv569523	chr15:55555602-55836704	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
12	nsv569524	chr15:55558624-55612511	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
13	nsv1040917	chr15:55562940-55943942	Flanking Active TSS Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Enhancers Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
14	nsv531054	chr15:55571230-55914205	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:55576800-55582800	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
2	chr15:55579000-55582800	Active TSS	Primary T helper cells PMA-I stimulated	--
3	chr15:55580000-55582800	Active TSS	Primary T killer memory cells from peripheral blood	blood
4	chr15:55580000-55583000	Active TSS	Breast Myoepithelial Primary Cells	Breast
5	chr15:55580200-55582800	Active TSS	Stomach Mucosa	stomach
6	chr15:55580200-55582800	Active TSS	K562	blood
7	chr15:55580400-55581800	Flanking Active TSS	Primary B cells from cord blood	blood
8	chr15:55580600-55581800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
9	chr15:55580600-55582800	Active TSS	Pancreatic Islets	Pancreatic Islet
10	chr15:55580600-55582800	Active TSS	HMEC	breast
11	chr15:55580600-55583000	Active TSS	Duodenum Smooth Muscle	Duodenum
12	chr15:55580800-55581800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr15:55580800-55581800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr15:55580800-55582800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr15:55580800-55582800	Active TSS	Liver	Liver
16	chr15:55580800-55582800	Active TSS	Fetal Stomach	stomach
17	chr15:55580800-55583000	Active TSS	Rectal Smooth Muscle	rectum
18	chr15:55581000-55581800	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
19	chr15:55581000-55581800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr15:55581000-55581800	Flanking Active TSS	Fetal Muscle Leg	muscle
21	chr15:55581000-55581800	Flanking Active TSS	Dnd41	blood
22	chr15:55581000-55582000	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
23	chr15:55581000-55582600	Active TSS	Esophagus	oesophagus
24	chr15:55581000-55582600	Active TSS	Gastric	stomach
25	chr15:55581000-55582800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr15:55581000-55582800	Active TSS	Primary monocytes fromperipheralblood	blood
27	chr15:55581000-55582800	Active TSS	Primary T killer naive cells fromperipheralblood	blood
28	chr15:55581000-55582800	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr15:55581000-55582800	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
30	chr15:55581000-55582800	Active TSS	Fetal Intestine Large	intestine
31	chr15:55581000-55582800	Active TSS	Fetal Intestine Small	intestine
32	chr15:55581000-55582800	Active TSS	Right Ventricle	heart
33	chr15:55581000-55583000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr15:55581000-55583000	Active TSS	Pancreas	Pancrea
35	chr15:55581000-55583000	Active TSS	NHDF-Ad	bronchial
36	chr15:55581000-55583200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr15:55581200-55581800	Flanking Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr15:55581200-55581800	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr15:55581200-55581800	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
40	chr15:55581200-55581800	Flanking Active TSS	Primary B cells from peripheral blood	blood
41	chr15:55581200-55581800	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr15:55581200-55581800	Flanking Active TSS	Brain Anterior Caudate	brain
43	chr15:55581200-55581800	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
44	chr15:55581200-55581800	Flanking Active TSS	Fetal Brain Female	brain
45	chr15:55581200-55581800	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
46	chr15:55581200-55582000	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
47	chr15:55581200-55582600	Active TSS	Lung	lung
48	chr15:55581200-55582600	Active TSS	Small Intestine	intestine
49	chr15:55581200-55582600	Active TSS	Spleen	Spleen
50	chr15:55581200-55582800	Active TSS	ES-I3 Cell Line	embryonic stem cell

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