The 2.0 version of rSNPBase

Variant report

Variant rs35879962
Chromosome Location chr15:55578678-55578679
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:80 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr15:55542400-55581000 Weak transcription Fetal Intestine Small intestine
2 chr15:55553200-55581000 Weak transcription Fetal Intestine Large intestine
3 chr15:55567800-55580800 Weak transcription Fetal Stomach stomach
4 chr15:55570200-55580400 Weak transcription Fetal Thymus thymus
5 chr15:55570200-55581200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
6 chr15:55570600-55580800 Weak transcription Rectal Mucosa Donor 29 rectum
7 chr15:55572000-55580800 Weak transcription Rectal Mucosa Donor 31 rectum
8 chr15:55572200-55581000 Weak transcription Skeletal Muscle Female skeletal muscle
9 chr15:55572400-55580800 Weak transcription Placenta Amnion Placenta Amnion
10 chr15:55572600-55580000 Weak transcription HepG2 liver
11 chr15:55572600-55581000 Weak transcription ES-I3 Cell Line embryonic stem cell
12 chr15:55573200-55579000 Enhancers Primary T helper cells fromperipheralblood blood
13 chr15:55573600-55579600 Enhancers Primary T regulatory cells fromperipheralblood blood
14 chr15:55574200-55581000 Weak transcription Fetal Muscle Leg muscle
15 chr15:55574400-55581400 Flanking Active TSS Primary neutrophils fromperipheralblood blood
16 chr15:55574800-55581000 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
17 chr15:55575000-55581000 Weak transcription Esophagus oesophagus
18 chr15:55575000-55581000 Weak transcription Right Ventricle heart
19 chr15:55575000-55581200 Weak transcription Left Ventricle heart
20 chr15:55575200-55578800 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
21 chr15:55575200-55579000 Enhancers Primary T helper naive cells from peripheral blood blood
22 chr15:55575200-55580800 Enhancers Primary T helper memory cells from peripheral blood 2 blood
23 chr15:55575200-55580800 Weak transcription Stomach Smooth Muscle stomach
24 chr15:55575200-55581000 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
25 chr15:55575200-55581000 Enhancers Primary T helper memory cells from peripheral blood 1 blood
26 chr15:55575200-55581000 Weak transcription Gastric stomach
27 chr15:55575200-55581000 Weak transcription Sigmoid Colon Sigmoid Colon
28 chr15:55575200-55581000 Weak transcription NHEK skin
29 chr15:55575400-55578800 Enhancers Primary T cells fromperipheralblood blood
30 chr15:55575400-55579000 Genic enhancers Primary hematopoietic stem cells short term culture blood
31 chr15:55575400-55580400 Enhancers Primary monocytes fromperipheralblood blood
32 chr15:55575400-55580800 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
33 chr15:55575400-55581000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
34 chr15:55575400-55581000 Weak transcription NHDF-Ad bronchial
35 chr15:55575400-55581000 Weak transcription NHLF lung
36 chr15:55575400-55581000 Weak transcription Osteobl bone
37 chr15:55575400-55581200 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
38 chr15:55575600-55580400 Weak transcription Primary B cells from peripheral blood blood
39 chr15:55575600-55580800 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
40 chr15:55575600-55581200 Weak transcription Right Atrium heart
41 chr15:55575800-55580400 Weak transcription Hela-S3 cervix
42 chr15:55575800-55580600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
43 chr15:55575800-55580600 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
44 chr15:55575800-55580600 Weak transcription HMEC breast
45 chr15:55575800-55580600 Weak transcription HUVEC blood vessel
46 chr15:55575800-55580800 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
47 chr15:55575800-55581000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
48 chr15:55575800-55581000 Weak transcription Pancreas Pancrea
49 chr15:55575800-55581000 Weak transcription Thymus Thymus
50 chr15:55575800-55581200 Weak transcription Lung lung

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Last update: Aug 31, 2015