Variant report

Variant	rs16953240
Chromosome Location	chr15:55700981-55700982
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF143	chr15:55699975-55701081	Hela-S3	cervix:	n/a	n/a
2	MYC	chr15:55700389-55701075	MCF10A-Er-Src	breast:	n/a	chr15:55700730-55700739
3	RAD21	chr15:55700176-55701042	A549	lung:	n/a	chr15:55700646-55700659
4	POLR2A	chr15:55699879-55701258	H1-hESC	embryonic stem cell:	n/a	n/a
5	RCOR1	chr15:55699862-55701131	K562	blood:	n/a	n/a
6	CHD2	chr15:55699634-55701188	Hela-S3	cervix:	n/a	n/a
7	KAP1	chr15:55699695-55701353	HEK293	kidney:	n/a	n/a
8	STAT3	chr15:55700577-55701048	MCF10A-Er-Src	breast:	n/a	n/a
9	POLR2A	chr15:55699797-55701184	IMR90	lung:	n/a	n/a
10	HCFC1	chr15:55700019-55701158	K562	blood:	n/a	n/a
11	EP300	chr15:55700244-55701026	GM12878	blood:	n/a	chr15:55700650-55700659 chr15:55700652-55700668
12	RCOR1	chr15:55699682-55701314	Hela-S3	cervix:	n/a	n/a
13	EP300	chr15:55700437-55701014	SK-N-SH_RA	brain:	n/a	chr15:55700650-55700659 chr15:55700652-55700668
14	SIN3AK20	chr15:55700358-55701007	A549	lung:	n/a	n/a
15	SIN3AK20	chr15:55700122-55701025	K562	blood:	n/a	n/a
16	ARID3A	chr15:55700139-55701084	K562	blood:	n/a	n/a
17	IKZF1	chr15:55700490-55701018	GM12878	blood:	n/a	n/a
18	TEAD4	chr15:55700294-55701121	ECC-1	luminal epithelium:	n/a	n/a
19	POU2F2	chr15:55700165-55700992	GM12878	blood:	n/a	chr15:55700322-55700334
20	MAX	chr15:55699779-55701227	Hela-S3	cervix:	n/a	chr15:55700730-55700739
21	HA-E2F1	chr15:55699744-55701139	MCF-7	breast:	n/a	chr15:55700658-55700668 chr15:55700136-55700147 chr15:55700135-55700146 chr15:55700650-55700660
22	SIN3A	chr15:55699578-55701226	H1-hESC	embryonic stem cell:	n/a	chr15:55700220-55700228 chr15:55699814-55699822 chr15:55700548-55700559
23	SP1	chr15:55700314-55701184	H1-hESC	embryonic stem cell:	n/a	n/a
24	TCF12	chr15:55699845-55701102	A549	lung:	n/a	n/a
25	RUNX3	chr15:55700120-55701136	GM12878	blood:	n/a	n/a
26	MAX	chr15:55699945-55701185	A549	lung:	n/a	chr15:55700730-55700739
27	MAFK	chr15:55699685-55701246	Hela-S3	cervix:	n/a	n/a
28	YY1	chr15:55700158-55701004	A549	lung:	n/a	chr15:55700588-55700602 chr15:55700585-55700596 chr15:55700466-55700480 chr15:55700649-55700658 chr15:55700644-55700658
29	REST	chr15:55700119-55701228	A549	lung:	n/a	chr15:55700788-55700798
30	MAZ	chr15:55700217-55701081	GM12878	blood:	n/a	chr15:55700730-55700739
31	BHLHE40	chr15:55700025-55701233	GM12878	blood:	n/a	chr15:55700654-55700670 chr15:55700528-55700544 chr15:55700677-55700693
32	FOXM1	chr15:55700184-55701014	GM12878	blood:	n/a	n/a
33	MAX	chr15:55700092-55701098	K562	blood:	n/a	chr15:55700730-55700739
34	WRNIP1	chr15:55699749-55701105	GM12878	blood:	n/a	n/a
35	MXI1	chr15:55699750-55701291	Hela-S3	cervix:	n/a	chr15:55700730-55700745
36	RFX5	chr15:55699615-55701270	Hela-S3	cervix:	n/a	chr15:55700729-55700744 chr15:55700729-55700744 chr15:55700728-55700745 chr15:55700730-55700739 chr15:55700727-55700741 chr15:55700729-55700744
37	HCFC1	chr15:55699444-55701440	Hela-S3	cervix:	n/a	n/a
38	CHD2	chr15:55700299-55701188	H1-hESC	embryonic stem cell:	n/a	n/a
39	USF2	chr15:55700396-55701156	Hela-S3	cervix:	n/a	chr15:55700654-55700670 chr15:55700528-55700544 chr15:55700677-55700693
40	CTCF	chr15:55699856-55701002	HCT-116	colon:	n/a	chr15:55700592-55700605
41	JUND	chr15:55699777-55701165	K562	blood:	n/a	n/a
42	POLR2A	chr15:55699722-55701102	Hela-S3	cervix:	n/a	n/a
43	MYC	chr15:55699678-55701106	Hela-S3	cervix:	n/a	chr15:55700730-55700739
44	POLR2A	chr15:55699559-55701193	Hela-S3	cervix:	n/a	n/a
45	MYC	chr15:55699729-55701253	K562	blood:	n/a	chr15:55700730-55700739
46	MXI1	chr15:55700260-55701143	K562	blood:	n/a	chr15:55700730-55700745
47	CHD2	chr15:55700214-55701023	K562	blood:	n/a	n/a
48	KAP1	chr15:55700306-55701247	U2OS	brain:	n/a	n/a
49	MXI1	chr15:55699368-55701461	SK-N-SH	brain:	n/a	chr15:55700730-55700745
50	MXI1	chr15:55700022-55700987	GM12878	blood:	n/a	chr15:55700730-55700745

No.	Distal block	Cell Line	Cell type
1	chr15:55656332..55658633-chr15:55699668..55701557,2	MCF-7	breast:
2	chr15:55687261..55690621-chr15:55699123..55703142,5	K562	blood:
3	chr15:55607556..55615100-chr15:55699006..55703115,13	K562	blood:
4	chr15:55609877..55611698-chr15:55698360..55701817,3	MCF-7	breast:
5	chr15:55486571..55489386-chr15:55698193..55701285,4	K562	blood:
6	chr15:55580643..55583951-chr15:55698978..55701737,3	K562	blood:
7	chr15:55698446..55701018-chr15:55709702..55712524,2	MCF-7	breast:
8	chr15:55608625..55613147-chr15:55698683..55702764,8	MCF-7	breast:
9	chr15:55689930..55691529-chr15:55699148..55701673,2	MCF-7	breast:
10	chr15:55607682..55613892-chr15:55697623..55703247,7	K562	blood:
11	chr15:55631303..55633200-chr15:55699872..55702073,2	MCF-7	breast:

Variant related genes	Relation type
CCPG1	TF binding region
ENSG00000261652	Chromatin interaction
ENSG00000137876	Chromatin interaction
ENSG00000225973	Chromatin interaction
ENSG00000069943	Chromatin interaction
ENSG00000260916	Chromatin interaction
ENSG00000069974	Chromatin interaction

Extended variants
information (count: 133 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:120)

rs_ID	r²[population]
rs10518810	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1075938	1.00[ASN][1000 genomes]
rs11732	1.00[CEU][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12101327	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12148255	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12899120	1.00[ASN][1000 genomes]
rs12901464	1.00[ASN][1000 genomes]
rs12902233	1.00[ASN][1000 genomes]
rs12903378	1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs12907135	1.00[ASN][1000 genomes]
rs12909207	1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs12911948	1.00[ASN][1000 genomes]
rs12915831	1.00[ASN][1000 genomes]
rs13329586	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16976307	1.00[CEU][hapmap];0.96[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16976314	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16976351	0.87[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[ASN][1000 genomes]
rs2414412	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28369251	1.00[ASN][1000 genomes]
rs28378485	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28413009	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28483325	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28636929	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28653717	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3203152	1.00[CEU][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34473609	1.00[ASN][1000 genomes]
rs34482650	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34659706	1.00[ASN][1000 genomes]
rs34855466	1.00[ASN][1000 genomes]
rs35396030	1.00[ASN][1000 genomes]
rs35720996	1.00[ASN][1000 genomes]
rs35768022	1.00[ASN][1000 genomes]
rs35879962	1.00[ASN][1000 genomes]
rs35928893	1.00[ASN][1000 genomes]
rs36119525	1.00[ASN][1000 genomes]
rs4294762	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs55706848	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56340826	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56760921	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57094422	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs57412310	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57489605	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57648583	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57809907	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58013690	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs58053176	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58220352	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58447274	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58507025	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58550265	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58581371	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58697860	1.00[ASN][1000 genomes]
rs58734748	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58743089	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59228226	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59562815	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59742963	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs60003039	1.00[ASN][1000 genomes]
rs60071399	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60439248	1.00[ASN][1000 genomes]
rs60561373	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60755763	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60925254	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61069460	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61139258	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6493780	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6493781	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71476714	1.00[ASN][1000 genomes]
rs71476716	1.00[ASN][1000 genomes]
rs71476717	1.00[ASN][1000 genomes]
rs71476718	1.00[ASN][1000 genomes]
rs71476719	1.00[ASN][1000 genomes]
rs7161981	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7162724	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7164158	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7164895	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7164984	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7168455	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7168869	0.87[CEU][hapmap]
rs7168882	1.00[CEU][hapmap];0.96[YRI][hapmap];0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7169460	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7170157	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7170970	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7171766	0.81[EUR][1000 genomes]
rs7173562	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7176013	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7177362	0.87[CEU][hapmap]
rs7177888	1.00[CEU][hapmap];0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7181226	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7181805	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7181999	1.00[CEU][hapmap];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7183937	0.87[CEU][hapmap];0.85[GIH][hapmap];0.81[TSI][hapmap];0.81[EUR][1000 genomes]
rs73406912	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73406921	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73406928	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73406986	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73408805	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73408809	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73408825	0.85[AFR][1000 genomes]
rs73408827	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73421623	0.80[AMR][1000 genomes]
rs73421633	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73421665	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74015572	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8023354	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8026454	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8027135	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];0.94[TSI][hapmap];0.93[YRI][hapmap];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8028482	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8029077	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8029258	1.00[CEU][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8031507	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8031625	0.86[ASN][1000 genomes]
rs8034029	0.87[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8039224	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8040840	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8041044	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.93[LWK][hapmap];1.00[MKK][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8041349	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8041382	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8041885	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8042642	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];0.94[TSI][hapmap];0.93[YRI][hapmap];0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917323	chr15:55290499-56041334	Genic enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
2	nsv1043789	chr15:55400872-56092454	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv1051046	chr15:55529291-55821973	Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
4	nsv1036173	chr15:55547689-55812194	Flanking Active TSS Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
5	nsv542391	chr15:55547689-55812194	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
6	nsv569523	chr15:55555602-55836704	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
7	nsv1040917	chr15:55562940-55943942	Flanking Active TSS Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Enhancers Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
8	nsv531054	chr15:55571230-55914205	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
9	nsv904243	chr15:55627528-55734158	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
10	nsv948522	chr15:55639867-56032099	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
11	nsv520799	chr15:55645661-55760522	Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
12	nsv1041635	chr15:55658171-55943942	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
13	nsv904244	chr15:55687969-55770911	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	17 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs16953240	CCPG1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:55698400-55701000	Active TSS	Duodenum Smooth Muscle	Duodenum
2	chr15:55698400-55701400	Active TSS	K562	blood
3	chr15:55698800-55701400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr15:55699000-55701400	Active TSS	A549	lung
5	chr15:55699200-55701800	Active TSS	Hela-S3	cervix
6	chr15:55699400-55701000	Active TSS	Duodenum Mucosa	Duodenum
7	chr15:55699400-55701000	Active TSS	Rectal Mucosa Donor 29	rectum
8	chr15:55699400-55701000	Active TSS	Stomach Smooth Muscle	stomach
9	chr15:55699400-55701000	Active TSS	Osteobl	bone
10	chr15:55699400-55701200	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr15:55699400-55701400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr15:55699400-55701400	Active TSS	HUES6 Cell Line	embryonic stem cell
13	chr15:55699400-55701400	Active TSS	HUES64 Cell Line	embryonic stem cell
14	chr15:55699400-55701400	Active TSS	iPS-15b Cell Line	embryonic stem cell
15	chr15:55699400-55701400	Active TSS	iPS-20b Cell Line	embryonic stem cell
16	chr15:55699400-55701400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
17	chr15:55699400-55701400	Active TSS	Colonic Mucosa	Colon
18	chr15:55699400-55701400	Active TSS	Colon Smooth Muscle	Colon
19	chr15:55699400-55701400	Active TSS	Fetal Lung	lung
20	chr15:55699400-55701400	Active TSS	Psoas Muscle	Psoas
21	chr15:55699400-55701400	Active TSS	Right Ventricle	heart
22	chr15:55699400-55701400	Active TSS	GM12878-XiMat	blood
23	chr15:55699400-55701400	Active TSS	NHDF-Ad	bronchial
24	chr15:55699400-55701600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr15:55699400-55701600	Active TSS	Brain Angular Gyrus	brain
26	chr15:55699400-55701600	Active TSS	Brain Anterior Caudate	brain
27	chr15:55699400-55701600	Active TSS	Brain Inferior Temporal Lobe	brain
28	chr15:55699400-55701600	Active TSS	Pancreatic Islets	Pancreatic Islet
29	chr15:55699600-55701000	Active TSS	Fetal Intestine Large	intestine
30	chr15:55699600-55701000	Active TSS	Placenta	Placenta
31	chr15:55699600-55701200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
32	chr15:55699600-55701200	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr15:55699600-55701200	Active TSS	H9 Cell Line	embryonic stem cell
34	chr15:55699600-55701200	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
35	chr15:55699600-55701200	Active TSS	Breast Myoepithelial Primary Cells	Breast
36	chr15:55699600-55701200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr15:55699600-55701200	Active TSS	Brain Hippocampus Middle	brain
38	chr15:55699600-55701200	Active TSS	Esophagus	oesophagus
39	chr15:55699600-55701200	Active TSS	Fetal Heart	heart
40	chr15:55699600-55701200	Active TSS	Fetal Muscle Trunk	muscle
41	chr15:55699600-55701200	Active TSS	Gastric	stomach
42	chr15:55699600-55701200	Active TSS	Left Ventricle	heart
43	chr15:55699600-55701200	Active TSS	Lung	lung
44	chr15:55699600-55701200	Active TSS	Ovary	ovary
45	chr15:55699600-55701200	Active TSS	Small Intestine	intestine
46	chr15:55699600-55701400	Active TSS	ES-I3 Cell Line	embryonic stem cell
47	chr15:55699600-55701400	Active TSS	H1 Cell Line	embryonic stem cell
48	chr15:55699600-55701400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr15:55699600-55701400	Active TSS	HUES48 Cell Line	embryonic stem cell
50	chr15:55699600-55701400	Active TSS	Muscle Satellite Cultured Cells	--

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