The 2.0 version of rSNPBase

Variant report

Variant rs2414412
Chromosome Location chr15:55678315-55678316
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:99 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr15:55611800-55699400 Weak transcription Colonic Mucosa Colon
2 chr15:55630000-55695000 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
3 chr15:55630800-55683600 Weak transcription Primary T killer naive cells fromperipheralblood blood
4 chr15:55637000-55699600 Weak transcription Cortex derived primary cultured neurospheres brain
5 chr15:55637400-55680200 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
6 chr15:55645000-55680800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
7 chr15:55645600-55681400 Weak transcription Stomach Mucosa stomach
8 chr15:55647800-55695400 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
9 chr15:55649200-55681000 Weak transcription HSMM muscle
10 chr15:55649800-55695800 Weak transcription Primary T killer memory cells from peripheral blood blood
11 chr15:55650800-55680800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
12 chr15:55659600-55682000 Strong transcription Primary neutrophils fromperipheralblood blood
13 chr15:55661200-55680800 Weak transcription NHLF lung
14 chr15:55662200-55681600 Weak transcription Esophagus oesophagus
15 chr15:55664200-55681200 Weak transcription NH-A brain
16 chr15:55665800-55680800 Weak transcription A549 lung
17 chr15:55666000-55681200 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
18 chr15:55666200-55680600 Weak transcription Muscle Satellite Cultured Cells --
19 chr15:55666200-55684000 Weak transcription HUVEC blood vessel
20 chr15:55667600-55681800 Strong transcription Primary monocytes fromperipheralblood blood
21 chr15:55667600-55682000 Strong transcription Monocytes-CD14+_RO01746 blood
22 chr15:55667600-55687000 Weak transcription Pancreas Pancrea
23 chr15:55668200-55699800 Weak transcription Spleen Spleen
24 chr15:55669200-55682600 Weak transcription Primary T helper naive cells from peripheral blood blood
25 chr15:55669400-55687200 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
26 chr15:55669400-55690400 Weak transcription Fetal Heart heart
27 chr15:55670000-55681800 Weak transcription Psoas Muscle Psoas
28 chr15:55670200-55679200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
29 chr15:55670200-55695000 Weak transcription Colon Smooth Muscle Colon
30 chr15:55670800-55687000 Weak transcription iPS-20b Cell Line embryonic stem cell
31 chr15:55671800-55682400 Weak transcription Fetal Muscle Leg muscle
32 chr15:55671800-55690400 Weak transcription Brain Angular Gyrus brain
33 chr15:55671800-55695800 Weak transcription HSMMtube muscle
34 chr15:55672000-55681400 Weak transcription Osteobl bone
35 chr15:55672000-55687000 Weak transcription Small Intestine intestine
36 chr15:55672200-55696000 Weak transcription Brain Substantia Nigra brain
37 chr15:55673600-55681200 Strong transcription Liver Liver
38 chr15:55674000-55679400 Strong transcription Primary B cells from peripheral blood blood
39 chr15:55674800-55679600 Strong transcription Rectal Mucosa Donor 29 rectum
40 chr15:55675000-55681000 Strong transcription Duodenum Smooth Muscle Duodenum
41 chr15:55675200-55679400 Strong transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
42 chr15:55675200-55679400 Strong transcription Primary T helper cells PMA-I stimulated --
43 chr15:55675200-55679800 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
44 chr15:55675200-55681400 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
45 chr15:55675200-55681400 Strong transcription Breast Myoepithelial Primary Cells Breast
46 chr15:55675400-55679400 Strong transcription Primary T cells fromperipheralblood blood
47 chr15:55675400-55679600 Strong transcription Fetal Intestine Large intestine
48 chr15:55675400-55681200 Strong transcription Primary T helper cells fromperipheralblood blood
49 chr15:55675600-55679600 Strong transcription Sigmoid Colon Sigmoid Colon
50 chr15:55675600-55681200 Strong transcription Primary mononuclear cells fromperipheralblood Blood

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Last update: Aug 31, 2015