The 2.0 version of rSNPBase

Variant report

Variant rs34659706
Chromosome Location chr15:55573388-55573389
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:77 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr15:55520800-55574800 Weak transcription Stomach Smooth Muscle stomach
2 chr15:55542400-55581000 Weak transcription Fetal Intestine Small intestine
3 chr15:55548600-55574800 Weak transcription Left Ventricle heart
4 chr15:55553200-55581000 Weak transcription Fetal Intestine Large intestine
5 chr15:55560200-55574800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
6 chr15:55560200-55575400 Weak transcription Thymus Thymus
7 chr15:55561600-55576600 Weak transcription Liver Liver
8 chr15:55563800-55574800 Weak transcription Lung lung
9 chr15:55565000-55574800 Enhancers Primary monocytes fromperipheralblood blood
10 chr15:55567800-55580800 Weak transcription Fetal Stomach stomach
11 chr15:55568400-55574800 Enhancers Primary Natural Killer cells fromperipheralblood blood
12 chr15:55569400-55578200 Weak transcription Fetal Kidney kidney
13 chr15:55570000-55574200 Weak transcription Right Atrium heart
14 chr15:55570200-55573800 Weak transcription Gastric stomach
15 chr15:55570200-55580400 Weak transcription Fetal Thymus thymus
16 chr15:55570200-55581200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
17 chr15:55570600-55580800 Weak transcription Rectal Mucosa Donor 29 rectum
18 chr15:55571200-55575600 Weak transcription Fetal Lung lung
19 chr15:55571200-55577800 Enhancers Fetal Adrenal Gland Adrenal Gland
20 chr15:55571800-55575200 Weak transcription Pancreatic Islets Pancreatic Islet
21 chr15:55572000-55573800 Weak transcription Breast Myoepithelial Primary Cells Breast
22 chr15:55572000-55580800 Weak transcription Rectal Mucosa Donor 31 rectum
23 chr15:55572200-55581000 Weak transcription Skeletal Muscle Female skeletal muscle
24 chr15:55572400-55574000 Weak transcription Stomach Mucosa stomach
25 chr15:55572400-55574200 Enhancers Primary T helper cells PMA-I stimulated --
26 chr15:55572400-55574200 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
27 chr15:55572400-55574200 Weak transcription Duodenum Mucosa Duodenum
28 chr15:55572400-55574200 Weak transcription HSMMtube muscle
29 chr15:55572400-55574400 Weak transcription Sigmoid Colon Sigmoid Colon
30 chr15:55572400-55574800 Enhancers Primary T helper memory cells from peripheral blood 2 blood
31 chr15:55572400-55580800 Weak transcription Placenta Amnion Placenta Amnion
32 chr15:55572600-55573400 Weak transcription GM12878-XiMat blood
33 chr15:55572600-55573400 Weak transcription K562 blood
34 chr15:55572600-55573600 Weak transcription Primary T cells fromperipheralblood blood
35 chr15:55572600-55573600 Weak transcription Primary T regulatory cells fromperipheralblood blood
36 chr15:55572600-55573600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
37 chr15:55572600-55573800 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
38 chr15:55572600-55573800 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
39 chr15:55572600-55573800 Weak transcription Primary B cells from cord blood blood
40 chr15:55572600-55573800 Weak transcription Primary hematopoietic stem cells blood
41 chr15:55572600-55573800 Enhancers Primary T helper 17 cells PMA-I stimulated --
42 chr15:55572600-55573800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
43 chr15:55572600-55573800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
44 chr15:55572600-55573800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
45 chr15:55572600-55573800 Weak transcription Aorta Aorta
46 chr15:55572600-55573800 Weak transcription HUVEC blood vessel
47 chr15:55572600-55573800 Enhancers Monocytes-CD14+_RO01746 blood
48 chr15:55572600-55573800 Weak transcription NHDF-Ad bronchial
49 chr15:55572600-55573800 Weak transcription NHLF lung
50 chr15:55572600-55574000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung

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Last update: Aug 31, 2015