Variant report

Variant	rs7535436
Chromosome Location	chr1:215250417-215250418
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr1:215250259-215250459	HepG2	liver:	n/a	chr1:215250341-215250352
2	POLR2A	chr1:215250259-215250481	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr1:215249267..215251952-chr1:215286200..215288230,2	MCF-7	breast:
2	chr1:215249732..215252476-chr1:215255654..215258556,2	K562	blood:
3	chr1:215249022..215252957-chr1:215253448..215258066,5	MCF-7	breast:

Variant related genes	Relation type
KCNK2	TF binding region
ENSG00000082482	Chromatin interaction

Extended variants
information (count: 101 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:100)

rs_ID	r²[population]
rs10127656	0.81[YRI][hapmap]
rs1015244	1.00[CHB][hapmap]
rs10746454	0.82[YRI][hapmap]
rs10746455	0.81[YRI][hapmap]
rs10779638	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10779640	0.82[YRI][hapmap]
rs10864150	0.87[YRI][hapmap]
rs11120495	0.82[YRI][hapmap]
rs12061587	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12069528	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12069967	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs12121815	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12239750	0.89[ASN][1000 genomes]
rs12742137	0.82[YRI][hapmap]
rs1339409	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs1538546	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs1556904	0.81[YRI][hapmap]
rs1947364	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.86[ASN][1000 genomes]
rs2363552	1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs2363553	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.86[ASN][1000 genomes]
rs2363562	0.94[AFR][1000 genomes]
rs2802656	1.00[JPT][hapmap]
rs2885815	0.82[YRI][hapmap]
rs4300189	0.82[YRI][hapmap]
rs4420064	0.81[ASN][1000 genomes]
rs4433363	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4531266	0.81[YRI][hapmap]
rs4573492	1.00[CHB][hapmap]
rs4581247	0.93[AFR][1000 genomes]
rs4589083	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55651080	0.89[ASN][1000 genomes]
rs55790910	0.84[ASN][1000 genomes]
rs55922125	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56036238	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56053976	0.89[ASN][1000 genomes]
rs56233922	0.84[ASN][1000 genomes]
rs56274886	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56373924	0.89[ASN][1000 genomes]
rs59581685	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61818261	0.89[ASN][1000 genomes]
rs61818265	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61818266	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61818267	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61818268	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61818271	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61818272	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61818276	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61818277	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61818278	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61818279	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61818290	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61818293	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61818294	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61818295	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61818296	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61818298	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61818301	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61818303	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61818304	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61818305	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61818307	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61818308	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61818309	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61818310	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61818311	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61818319	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61818321	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61818323	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61818324	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61818325	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61818326	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61818327	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61818329	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61818331	0.89[ASN][1000 genomes]
rs61818338	0.84[ASN][1000 genomes]
rs61818341	0.84[ASN][1000 genomes]
rs61818342	0.84[ASN][1000 genomes]
rs61818343	0.84[ASN][1000 genomes]
rs61818346	0.84[ASN][1000 genomes]
rs61819980	0.89[ASN][1000 genomes]
rs61819981	0.89[ASN][1000 genomes]
rs61819982	0.89[ASN][1000 genomes]
rs61820009	0.89[ASN][1000 genomes]
rs61820011	0.89[ASN][1000 genomes]
rs61820013	0.89[ASN][1000 genomes]
rs61820014	0.89[ASN][1000 genomes]
rs61820015	0.89[ASN][1000 genomes]
rs6662353	0.81[YRI][hapmap]
rs6665177	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs6675926	0.82[YRI][hapmap]
rs6688713	0.86[YRI][hapmap]
rs6696333	0.82[YRI][hapmap]
rs7513709	0.82[YRI][hapmap]
rs7516689	0.81[YRI][hapmap]
rs7528816	0.94[YRI][hapmap];0.89[AFR][1000 genomes]
rs7530450	1.00[CHB][hapmap]
rs7541543	0.81[YRI][hapmap]
rs7547655	0.81[YRI][hapmap]
rs7550501	0.93[AFR][1000 genomes]
rs7551562	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754411	chr1:215235605-215281605	Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:215229400-215253000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr1:215248200-215252600	Weak transcription	NHDF-Ad	bronchial
3	chr1:215250200-215250600	Enhancers	Fetal Adrenal Gland	Adrenal Gland

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links