Variant report

Variant	rs9998017
Chromosome Location	chr4:144105382-144105383
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	IRF1	chr4:144105206-144106285	K562	blood:	n/a	chr4:144106050-144106059
2	TBL1XR1	chr4:144104684-144106232	K562	blood:	n/a	n/a
3	JUN	chr4:144105376-144105944	K562	blood:	n/a	n/a
4	POLR2A	chr4:144105207-144106325	K562	blood:	n/a	n/a
5	POLR2A	chr4:144105228-144106464	ProgFib	skin:	n/a	n/a
6	POLR2A	chr4:144105188-144107085	H1-hESC	embryonic stem cell:	n/a	n/a
7	TAF1	chr4:144105382-144106386	K562	blood:	n/a	n/a
8	MAFK	chr4:144105343-144106328	Hela-S3	cervix:	n/a	chr4:144106149-144106159
9	MAX	chr4:144105379-144107299	HepG2	liver:	n/a	n/a
10	FOS	chr4:144105183-144105537	MCF10A-Er-Src	breast:	n/a	n/a
11	TAF1	chr4:144105367-144106831	ECC-1	luminal epithelium:	n/a	n/a
12	CHD1	chr4:144105356-144105740	H1-hESC	embryonic stem cell:	n/a	n/a
13	CBX3	chr4:144105369-144106340	K562	blood:	n/a	n/a
14	BRCA1	chr4:144105327-144106102	Hela-S3	cervix:	n/a	n/a
15	POLR2A	chr4:144105361-144106385	PFSK-1	brain:	n/a	n/a
16	CHD1	chr4:144105116-144110169	IMR90	lung:	n/a	n/a
17	POLR2A	chr4:144105321-144106381	U87	brain:	n/a	n/a
18	CEBPB	chr4:144105025-144106327	Hela-S3	cervix:	n/a	chr4:144105183-144105194 chr4:144105182-144105195
19	BCLAF1	chr4:144105357-144106491	GM12878	blood:	n/a	chr4:144106278-144106291 chr4:144106052-144106061 chr4:144106234-144106247 chr4:144106139-144106147 chr4:144106334-144106347 chr4:144106339-144106348 chr4:144106336-144106345
20	RFX5	chr4:144105263-144107039	Hela-S3	cervix:	n/a	n/a
21	CREB1	chr4:144105371-144107211	HepG2	liver:	n/a	n/a
22	TBP	chr4:144105132-144106275	Hela-S3	cervix:	n/a	n/a
23	POLR2A	chr4:144105331-144106692	PFSK-1	brain:	n/a	n/a
24	POLR2A	chr4:144104957-144107100	PBDE	blood:	n/a	n/a
25	MAX	chr4:144105326-144106393	SK-N-SH	brain:	n/a	n/a
26	POLR2A	chr4:144104748-144107186	GM12878	blood:	n/a	n/a
27	YY1	chr4:144105352-144106962	GM12878	blood:	n/a	chr4:144106279-144106290 chr4:144106338-144106347 chr4:144106339-144106350 chr4:144106332-144106346 chr4:144105404-144105414
28	POLR2A	chr4:144105190-144106502	SK-N-MC	brain:	n/a	n/a
29	MAX	chr4:144105370-144107308	HepG2	liver:	n/a	n/a
30	POLR2A	chr4:144105284-144107240	GM12892	blood:	n/a	n/a
31	TAF1	chr4:144105327-144106475	A549	lung:	n/a	n/a
32	REST	chr4:144105356-144106322	H1-neurons	neurons:	n/a	n/a
33	POLR2A	chr4:144105345-144107056	GM19099	blood:	n/a	n/a
34	ATF2	chr4:144105313-144106459	GM12878	blood:	n/a	n/a
35	MTA3	chr4:144105330-144106012	GM12878	blood:	n/a	n/a
36	POLR2A	chr4:144105361-144106305	HCT-116	colon:	n/a	n/a
37	ELK1	chr4:144105295-144106128	Hela-S3	cervix:	n/a	n/a
38	MYC	chr4:144105269-144106699	K562	blood:	n/a	n/a
39	CREB1	chr4:144105261-144106491	K562	blood:	n/a	n/a
40	IRF1	chr4:144105354-144106253	K562	blood:	n/a	chr4:144106050-144106059
41	PML	chr4:144105165-144106877	GM12878	blood:	n/a	n/a
42	POLR2A	chr4:144105282-144107233	HepG2	liver:	n/a	n/a
43	POLR2A	chr4:144104897-144107185	MCF10A-Er-Src	breast:	n/a	n/a
44	MTA3	chr4:144105308-144107198	GM12878	blood:	n/a	n/a
45	TBP	chr4:144105292-144106951	K562	blood:	n/a	n/a
46	POLR2A	chr4:144105327-144107119	K562	blood:	n/a	n/a
47	BACH1	chr4:144105353-144105923	K562	blood:	n/a	n/a
48	EP300	chr4:144105317-144106310	K562	blood:	n/a	chr4:144106049-144106063 chr4:144106053-144106062 chr4:144105372-144105379
49	HCFC1	chr4:144105191-144107147	Hela-S3	cervix:	n/a	n/a
50	POLR2A	chr4:144105320-144106994	H1-neurons	neurons:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr4:144104818..144107585-chr4:144256509..144260468,4	MCF-7	breast:
2	chr4:144104958..144107554-chr4:144256815..144258504,3	K562	blood:
3	chr4:144092272..144094254-chr4:144104070..144105753,2	K562	blood:
4	chr4:144104831..144107773-chr4:144434197..144436489,3	K562	blood:
5	chr1:28974828..28975662-chr4:144105371..144106181,2	HCT-116	colon:
6	chr4:143764792..143768376-chr4:144104488..144107848,3	MCF-7	breast:
7	chr4:144104098..144105841-chr4:144264877..144267593,2	K562	blood:
8	chr12:7052821..7053654-chr4:144105313..144106161,2	HCT-116	colon:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-INPP4B-2	chr4:144104326-144105956	NONHSAT098550

Variant related genes	Relation type
USP38	TF binding region
ENSG00000109458	Chromatin interaction
ENSG00000245112	Chromatin interaction
ENSG00000153147	Chromatin interaction
ENSG00000111678	Chromatin interaction
ENSG00000109452	Chromatin interaction
ENSG00000270103	Chromatin interaction
ENSG00000178972	Chromatin interaction
ENSG00000238923	Chromatin interaction

Extended variants
information (count: 185 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:185)

rs_ID	r²[population]
rs10000911	1.00[ASW][hapmap];0.95[CEU][hapmap];0.89[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10001113	0.90[ASN][1000 genomes]
rs10002867	0.90[ASN][1000 genomes]
rs10002888	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10004364	0.87[ASN][1000 genomes]
rs10004598	0.88[ASN][1000 genomes]
rs10009906	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10010367	0.90[ASN][1000 genomes]
rs10011709	0.93[ASN][1000 genomes]
rs10012434	0.93[ASN][1000 genomes]
rs10012713	0.82[CEU][hapmap]
rs10015190	0.93[ASN][1000 genomes]
rs10015279	0.83[ASN][1000 genomes]
rs10015751	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10019249	0.93[ASN][1000 genomes]
rs10026015	0.90[ASN][1000 genomes]
rs10028434	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10029373	0.90[ASN][1000 genomes]
rs10031363	0.88[ASN][1000 genomes]
rs10033104	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10034769	0.88[ASN][1000 genomes]
rs10155434	1.00[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1039762	0.90[ASN][1000 genomes]
rs1039763	0.90[ASN][1000 genomes]
rs10434185	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10519678	0.89[ASN][1000 genomes]
rs10857405	0.88[ASN][1000 genomes]
rs11100770	0.88[ASN][1000 genomes]
rs11100771	0.88[ASN][1000 genomes]
rs11100772	0.85[ASN][1000 genomes]
rs11100778	0.92[ASN][1000 genomes]
rs11100779	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11100780	1.00[CHD][hapmap];0.81[GIH][hapmap];0.87[JPT][hapmap];0.83[MEX][hapmap];0.93[ASN][1000 genomes]
rs11100781	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11100782	0.89[ASN][1000 genomes]
rs11100783	0.90[ASN][1000 genomes]
rs11724872	1.00[CHD][hapmap];0.81[GIH][hapmap];0.94[JPT][hapmap];0.83[MEX][hapmap];0.90[ASN][1000 genomes]
rs11725565	0.81[GIH][hapmap];0.94[JPT][hapmap];0.83[MEX][hapmap];0.90[ASN][1000 genomes]
rs11727441	0.90[ASN][1000 genomes]
rs11728962	0.89[ASN][1000 genomes]
rs11732484	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11737209	0.90[ASN][1000 genomes]
rs11933603	0.94[JPT][hapmap];0.90[ASN][1000 genomes]
rs11940580	0.90[ASN][1000 genomes]
rs11947142	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12499485	0.89[ASN][1000 genomes]
rs12501994	0.94[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs12505142	0.89[ASN][1000 genomes]
rs12506120	0.84[ASN][1000 genomes]
rs12640698	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12649219	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13102238	0.87[ASN][1000 genomes]
rs13106497	0.94[JPT][hapmap];0.90[ASN][1000 genomes]
rs13113047	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13114280	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13116414	0.89[ASN][1000 genomes]
rs13116507	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13118943	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13119330	0.89[ASN][1000 genomes]
rs13128884	0.90[ASN][1000 genomes]
rs13137565	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13138084	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13139457	0.94[JPT][hapmap];0.90[ASN][1000 genomes]
rs13140643	0.88[ASN][1000 genomes]
rs13151561	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1440410	0.89[ASN][1000 genomes]
rs1440411	0.90[ASN][1000 genomes]
rs1440412	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1440414	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1440416	0.90[ASN][1000 genomes]
rs1440418	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1440419	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1470130	0.90[ASN][1000 genomes]
rs1605581	0.90[ASN][1000 genomes]
rs2010767	0.89[ASN][1000 genomes]
rs2119269	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2165301	0.89[ASN][1000 genomes]
rs2165302	0.90[ASN][1000 genomes]
rs2323076	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2323077	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28470858	0.89[ASN][1000 genomes]
rs28592151	0.93[ASN][1000 genomes]
rs28649839	0.90[ASN][1000 genomes]
rs300894	0.82[CEU][hapmap]
rs300921	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs300924	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs300925	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs300927	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs300929	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs300934	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs300938	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs300939	0.90[ASN][1000 genomes]
rs300940	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs300941	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs300943	0.82[CEU][hapmap];0.82[MEX][hapmap]
rs300951	0.86[CEU][hapmap];0.88[CHB][hapmap]
rs34168479	0.90[ASN][1000 genomes]
rs34342939	0.89[ASN][1000 genomes]
rs34664017	0.93[ASN][1000 genomes]
rs3910622	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4131029	0.94[JPT][hapmap];0.89[ASN][1000 genomes]
rs4132266	1.00[CHD][hapmap];0.81[GIH][hapmap];0.94[JPT][hapmap];0.83[MEX][hapmap];0.93[ASN][1000 genomes]
rs4234886	1.00[CHD][hapmap];0.81[GIH][hapmap];0.94[JPT][hapmap];0.90[ASN][1000 genomes]
rs4234887	0.89[ASN][1000 genomes]
rs4285045	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4290853	0.89[ASN][1000 genomes]
rs4318600	0.88[ASN][1000 genomes]
rs4323054	0.88[ASN][1000 genomes]
rs4323055	0.88[ASN][1000 genomes]
rs4333135	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4336176	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4407450	0.89[ASN][1000 genomes]
rs4413361	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4502634	0.88[ASN][1000 genomes]
rs4511955	0.90[ASN][1000 genomes]
rs4513514	0.94[JPT][hapmap];0.90[ASN][1000 genomes]
rs4561881	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4566607	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4574353	0.89[ASN][1000 genomes]
rs4579067	0.82[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4582112	0.90[ASN][1000 genomes]
rs4626148	0.88[ASN][1000 genomes]
rs4637346	0.90[ASN][1000 genomes]
rs4690715	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs4690771	0.88[ASN][1000 genomes]
rs4690775	0.94[JPT][hapmap];0.93[ASN][1000 genomes]
rs4690777	0.89[ASN][1000 genomes]
rs4690778	0.86[ASN][1000 genomes]
rs4690779	0.94[JPT][hapmap];0.90[ASN][1000 genomes]
rs4690780	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4690781	0.89[ASN][1000 genomes]
rs4690783	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs534750	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57168887	0.89[ASN][1000 genomes]
rs587254	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs632359	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6537150	0.88[ASN][1000 genomes]
rs6537151	0.88[ASN][1000 genomes]
rs6812522	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6816223	0.84[ASN][1000 genomes]
rs6818149	0.94[JPT][hapmap];0.89[ASN][1000 genomes]
rs6820340	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs6820538	0.90[ASN][1000 genomes]
rs6822299	0.89[ASN][1000 genomes]
rs6826771	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6827229	0.90[ASN][1000 genomes]
rs6828369	0.89[ASN][1000 genomes]
rs6829621	0.88[ASN][1000 genomes]
rs6832943	0.89[ASN][1000 genomes]
rs6833582	0.89[ASN][1000 genomes]
rs6837133	0.84[ASN][1000 genomes]
rs6839312	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6845478	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6845907	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6848475	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6854861	0.88[ASN][1000 genomes]
rs6856785	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72719159	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72719160	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72719163	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72719173	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72719179	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72719180	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7435424	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7436840	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs763918	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7656276	0.93[ASN][1000 genomes]
rs7670439	0.93[ASN][1000 genomes]
rs7673827	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7675127	0.82[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7680365	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7685075	0.88[ASN][1000 genomes]
rs7685461	0.88[ASN][1000 genomes]
rs7687417	0.93[ASN][1000 genomes]
rs7692813	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7693583	0.88[ASN][1000 genomes]
rs7693817	0.88[ASN][1000 genomes]
rs9308169	0.89[ASN][1000 genomes]
rs9631769	0.88[ASN][1000 genomes]
rs9685571	0.88[ASN][1000 genomes]
rs9790396	0.88[ASN][1000 genomes]
rs9790822	0.88[ASN][1000 genomes]
rs985619	0.89[ASN][1000 genomes]
rs9992676	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9996072	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9998017	SLC10A7	cis	cerebellum	SCAN

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:144099200-144105400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr4:144099200-144105400	Weak transcription	Left Ventricle	heart
3	chr4:144099200-144105400	Weak transcription	Small Intestine	intestine
4	chr4:144104400-144109800	Active TSS	K562	blood
5	chr4:144104600-144105400	Flanking Active TSS	Primary T cells from cord blood	blood
6	chr4:144104600-144105400	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr4:144104600-144105400	Flanking Active TSS	Dnd41	blood
8	chr4:144104600-144105600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr4:144104600-144106600	Active TSS	Skeletal Muscle Female	skeletal muscle
10	chr4:144104600-144108600	Active TSS	Pancreatic Islets	Pancreatic Islet
11	chr4:144104600-144109000	Active TSS	Duodenum Mucosa	Duodenum
12	chr4:144104600-144109600	Active TSS	iPS-20b Cell Line	embryonic stem cell
13	chr4:144104800-144105400	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
14	chr4:144104800-144105400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr4:144104800-144105400	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
16	chr4:144104800-144105400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
17	chr4:144104800-144105400	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
18	chr4:144104800-144105400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
19	chr4:144104800-144105400	Flanking Active TSS	Brain Angular Gyrus	brain
20	chr4:144104800-144105400	Flanking Active TSS	Brain Anterior Caudate	brain
21	chr4:144104800-144105400	Flanking Active TSS	Fetal Kidney	kidney
22	chr4:144104800-144105600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
23	chr4:144104800-144105600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
24	chr4:144104800-144105600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr4:144104800-144105600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr4:144104800-144105600	Active TSS	Brain Germinal Matrix	brain
27	chr4:144104800-144105800	Flanking Active TSS	Primary B cells from cord blood	blood
28	chr4:144104800-144106200	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr4:144104800-144108600	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr4:144104800-144108800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
31	chr4:144104800-144108800	Active TSS	Duodenum Smooth Muscle	Duodenum
32	chr4:144104800-144109000	Active TSS	Psoas Muscle	Psoas
33	chr4:144104800-144109200	Active TSS	ES-I3 Cell Line	embryonic stem cell
34	chr4:144104800-144109600	Active TSS	HUES6 Cell Line	embryonic stem cell
35	chr4:144104800-144109600	Active TSS	Fetal Intestine Large	intestine
36	chr4:144104800-144110800	Active TSS	Right Ventricle	heart
37	chr4:144104800-144111000	Active TSS	NHLF	lung
38	chr4:144105000-144105400	Flanking Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr4:144105000-144105400	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
40	chr4:144105000-144105400	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
41	chr4:144105000-144105400	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr4:144105000-144105400	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
43	chr4:144105000-144105400	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
44	chr4:144105000-144105400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr4:144105000-144105400	Flanking Active TSS	Adipose Nuclei	Adipose
46	chr4:144105000-144105400	Flanking Active TSS	Brain Substantia Nigra	brain
47	chr4:144105000-144105400	Flanking Active TSS	Fetal Heart	heart
48	chr4:144105000-144105400	Flanking Active TSS	Thymus	Thymus
49	chr4:144105000-144105400	Flanking Active TSS	Hela-S3	cervix
50	chr4:144105000-144105400	Flanking Active TSS	HepG2	liver

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