Variant report

Variant	rs10176845
Chromosome Location	chr2:114666350-114666351
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:114662250..114664932-chr2:114666034..114668199,2	K562	blood:
2	chr2:114665254..114667466-chr2:114677841..114679898,2	K562	blood:

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10187400	1.00[EUR][1000 genomes]
rs10496457	1.00[EUR][1000 genomes]
rs11889509	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11889598	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11891411	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11891462	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11894827	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11895599	1.00[EUR][1000 genomes]
rs12105197	1.00[EUR][1000 genomes]
rs13384052	1.00[EUR][1000 genomes]
rs17045715	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17045864	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17046832	1.00[EUR][1000 genomes]
rs17048352	1.00[EUR][1000 genomes]
rs55641866	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55871409	1.00[EUR][1000 genomes]
rs55898668	1.00[EUR][1000 genomes]
rs55926723	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55952342	1.00[EUR][1000 genomes]
rs55959179	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55969528	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56235472	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57250836	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57443397	1.00[EUR][1000 genomes]
rs58242493	1.00[EUR][1000 genomes]
rs58556274	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59403353	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59858371	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60313988	1.00[EUR][1000 genomes]
rs60798508	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60896642	1.00[EUR][1000 genomes]
rs60967736	1.00[EUR][1000 genomes]
rs61113571	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61179082	1.00[EUR][1000 genomes]
rs61516254	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61704468	1.00[EUR][1000 genomes]
rs6743688	1.00[EUR][1000 genomes]
rs72948697	1.00[EUR][1000 genomes]
rs72954522	1.00[EUR][1000 genomes]
rs72954542	1.00[EUR][1000 genomes]
rs72954545	1.00[EUR][1000 genomes]
rs72954552	1.00[EUR][1000 genomes]
rs72954575	1.00[EUR][1000 genomes]
rs73955093	1.00[EUR][1000 genomes]
rs73955096	1.00[EUR][1000 genomes]
rs73955101	1.00[EUR][1000 genomes]
rs73955102	1.00[EUR][1000 genomes]
rs73955460	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73955469	1.00[EUR][1000 genomes]
rs73957403	1.00[EUR][1000 genomes]
rs73957404	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73957406	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73957408	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73957422	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73957425	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73957426	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73957431	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73957432	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73957433	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:114648600-114667600	Weak transcription	Lung	lung
2	chr2:114649200-114673200	Weak transcription	Placenta	Placenta
3	chr2:114652000-114667600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr2:114652000-114667600	Weak transcription	Esophagus	oesophagus
5	chr2:114652200-114700600	Weak transcription	Fetal Brain Male	brain
6	chr2:114652400-114686000	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr2:114653400-114672600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr2:114653600-114734800	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr2:114654000-114670000	Enhancers	Primary neutrophils fromperipheralblood	blood
10	chr2:114654400-114667600	Weak transcription	Thymus	Thymus
11	chr2:114654600-114674600	Weak transcription	Hela-S3	cervix
12	chr2:114654600-114675400	Weak transcription	Fetal Stomach	stomach
13	chr2:114654800-114666800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
14	chr2:114655600-114667600	Weak transcription	HMEC	breast
15	chr2:114655600-114667800	Weak transcription	Fetal Intestine Small	intestine
16	chr2:114655800-114672600	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr2:114655800-114672600	Weak transcription	NHEK	skin
18	chr2:114656600-114668000	Weak transcription	NHLF	lung
19	chr2:114656800-114670800	Weak transcription	Dnd41	blood
20	chr2:114658000-114667800	Weak transcription	Rectal Smooth Muscle	rectum
21	chr2:114658000-114675400	Weak transcription	Aorta	Aorta
22	chr2:114658000-114689400	Weak transcription	Fetal Heart	heart
23	chr2:114658200-114667600	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr2:114658200-114668000	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr2:114658400-114671200	Weak transcription	Osteobl	bone
26	chr2:114658400-114674200	Weak transcription	Fetal Intestine Large	intestine
27	chr2:114658800-114667600	Weak transcription	Gastric	stomach
28	chr2:114659000-114667600	Weak transcription	Pancreas	Pancrea
29	chr2:114659000-114671200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr2:114659800-114667600	Weak transcription	Brain Hippocampus Middle	brain
31	chr2:114660000-114667400	Weak transcription	Brain Substantia Nigra	brain
32	chr2:114660200-114671000	Weak transcription	NH-A	brain
33	chr2:114661000-114667800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr2:114661000-114671000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr2:114661200-114666800	Weak transcription	Duodenum Mucosa	Duodenum
36	chr2:114661200-114667400	Weak transcription	Stomach Mucosa	stomach
37	chr2:114661200-114667600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
38	chr2:114661200-114667800	Weak transcription	Skeletal Muscle Female	skeletal muscle
39	chr2:114661200-114683800	Weak transcription	Colonic Mucosa	Colon
40	chr2:114661400-114667400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
41	chr2:114661600-114666800	Weak transcription	Colon Smooth Muscle	Colon
42	chr2:114661600-114670800	Weak transcription	Fetal Thymus	thymus
43	chr2:114661800-114667200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr2:114661800-114667600	Weak transcription	Skeletal Muscle Male	skeletal muscle
45	chr2:114662000-114667200	Weak transcription	Brain Angular Gyrus	brain
46	chr2:114662200-114675200	Weak transcription	H1 Cell Line	embryonic stem cell
47	chr2:114662400-114667800	Weak transcription	Brain Anterior Caudate	brain
48	chr2:114662400-114671000	Weak transcription	HUES64 Cell Line	embryonic stem cell
49	chr2:114662400-114671000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr2:114662400-114672400	Weak transcription	HUES48 Cell Line	embryonic stem cell

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