Variant report

Variant	rs12105197
Chromosome Location	chr2:114603025-114603026
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	JUN	chr2:114602966-114603089	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:114596973..114598913-chr2:114602425..114605423,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000228857	TF binding region

rs_ID	r²[population]
rs10176845	1.00[EUR][1000 genomes]
rs10187400	1.00[EUR][1000 genomes]
rs10496457	1.00[EUR][1000 genomes]
rs11889509	1.00[EUR][1000 genomes]
rs11889598	1.00[EUR][1000 genomes]
rs11891411	1.00[EUR][1000 genomes]
rs11891462	1.00[EUR][1000 genomes]
rs11894827	1.00[EUR][1000 genomes]
rs11895599	1.00[EUR][1000 genomes]
rs13384052	1.00[EUR][1000 genomes]
rs17045715	1.00[EUR][1000 genomes]
rs17045864	1.00[EUR][1000 genomes]
rs17046832	1.00[EUR][1000 genomes]
rs17048352	1.00[EUR][1000 genomes]
rs4255968	1.00[EUR][1000 genomes]
rs55641866	1.00[EUR][1000 genomes]
rs55871409	1.00[EUR][1000 genomes]
rs55898668	1.00[EUR][1000 genomes]
rs55926723	1.00[EUR][1000 genomes]
rs55952342	1.00[EUR][1000 genomes]
rs55959179	1.00[EUR][1000 genomes]
rs55969528	1.00[EUR][1000 genomes]
rs56235472	1.00[EUR][1000 genomes]
rs57250836	1.00[EUR][1000 genomes]
rs57443397	1.00[EUR][1000 genomes]
rs58242493	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58556274	1.00[EUR][1000 genomes]
rs59403353	1.00[EUR][1000 genomes]
rs59858371	1.00[EUR][1000 genomes]
rs60313988	1.00[EUR][1000 genomes]
rs60779750	1.00[EUR][1000 genomes]
rs60798508	1.00[EUR][1000 genomes]
rs60896642	1.00[EUR][1000 genomes]
rs60967736	1.00[EUR][1000 genomes]
rs61113571	1.00[EUR][1000 genomes]
rs61179082	1.00[EUR][1000 genomes]
rs61516254	1.00[EUR][1000 genomes]
rs61704468	1.00[EUR][1000 genomes]
rs6743688	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72948697	1.00[EUR][1000 genomes]
rs72954522	1.00[EUR][1000 genomes]
rs72954542	1.00[EUR][1000 genomes]
rs72954545	1.00[EUR][1000 genomes]
rs72954552	1.00[EUR][1000 genomes]
rs72954575	1.00[EUR][1000 genomes]
rs73955093	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73955096	1.00[EUR][1000 genomes]
rs73955101	1.00[EUR][1000 genomes]
rs73955102	1.00[EUR][1000 genomes]
rs73955460	1.00[EUR][1000 genomes]
rs73955469	1.00[EUR][1000 genomes]
rs73957403	1.00[EUR][1000 genomes]
rs73957404	1.00[EUR][1000 genomes]
rs73957406	1.00[EUR][1000 genomes]
rs73957408	1.00[EUR][1000 genomes]
rs73957425	1.00[EUR][1000 genomes]
rs73957426	1.00[EUR][1000 genomes]
rs73957431	1.00[EUR][1000 genomes]
rs73957432	1.00[EUR][1000 genomes]
rs73957433	1.00[EUR][1000 genomes]

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:114574200-114603600	Weak transcription	Primary B cells from cord blood	blood
2	chr2:114596400-114621000	Weak transcription	Aorta	Aorta
3	chr2:114596600-114603400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr2:114596600-114611600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr2:114596800-114632800	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr2:114597600-114631400	Weak transcription	Primary T helper cells PMA-I stimulated	--
7	chr2:114601200-114606200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr2:114601200-114606800	Weak transcription	NHLF	lung
9	chr2:114601400-114612000	Weak transcription	Primary T cells from cord blood	blood
10	chr2:114601600-114606400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr2:114601800-114604600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr2:114601800-114606200	Weak transcription	NHEK	skin
13	chr2:114601800-114606400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr2:114601800-114606400	Weak transcription	Osteobl	bone
15	chr2:114602000-114604600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr2:114602200-114604200	Weak transcription	HMEC	breast
17	chr2:114602400-114604000	Weak transcription	NHDF-Ad	bronchial
18	chr2:114602800-114626000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr2:114603000-114603200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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