Variant report

Variant	rs55641866
Chromosome Location	chr2:114676135-114676136
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:114668742..114673140-chr2:114673831..114676869,6	K562	blood:
2	chr2:114512877..114515552-chr2:114673985..114678016,3	K562	blood:
3	chr2:114647540..114650336-chr2:114674898..114676780,2	K562	blood:
4	chr2:114669911..114672374-chr2:114673667..114676580,4	K562	blood:
5	chr2:114645266..114650561-chr2:114670334..114676393,6	MCF-7	breast:
6	chr2:114649589..114651914-chr2:114675375..114678075,2	MCF-7	breast:
7	chr2:114512877..114514598-chr2:114675110..114678016,2	K562	blood:
8	chr2:114647540..114651375-chr2:114674898..114677081,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000115091	Chromatin interaction
ENSG00000115084	Chromatin interaction
ENSG00000270019	Chromatin interaction

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10176845	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10187400	1.00[EUR][1000 genomes]
rs10496457	1.00[EUR][1000 genomes]
rs11889509	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11889598	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11891411	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11891462	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11894827	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11895599	1.00[EUR][1000 genomes]
rs12105197	1.00[EUR][1000 genomes]
rs13384052	1.00[EUR][1000 genomes]
rs17045715	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17045864	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17046832	1.00[EUR][1000 genomes]
rs17048352	1.00[EUR][1000 genomes]
rs55871409	1.00[EUR][1000 genomes]
rs55898668	1.00[EUR][1000 genomes]
rs55926723	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55952342	1.00[EUR][1000 genomes]
rs55959179	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55969528	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56235472	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57250836	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57443397	1.00[EUR][1000 genomes]
rs58242493	1.00[EUR][1000 genomes]
rs58556274	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59403353	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59858371	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60313988	1.00[EUR][1000 genomes]
rs60798508	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60896642	1.00[EUR][1000 genomes]
rs60967736	1.00[EUR][1000 genomes]
rs61113571	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61179082	1.00[EUR][1000 genomes]
rs61516254	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61704468	1.00[EUR][1000 genomes]
rs6743688	1.00[EUR][1000 genomes]
rs72948697	1.00[EUR][1000 genomes]
rs72954522	1.00[EUR][1000 genomes]
rs72954542	1.00[EUR][1000 genomes]
rs72954545	1.00[EUR][1000 genomes]
rs72954552	1.00[EUR][1000 genomes]
rs72954575	1.00[EUR][1000 genomes]
rs73955093	1.00[EUR][1000 genomes]
rs73955096	1.00[EUR][1000 genomes]
rs73955101	1.00[EUR][1000 genomes]
rs73955102	1.00[EUR][1000 genomes]
rs73955460	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73955469	1.00[EUR][1000 genomes]
rs73957403	1.00[EUR][1000 genomes]
rs73957404	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73957406	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73957408	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73957422	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73957425	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73957426	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73957431	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73957432	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73957433	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:114652200-114700600	Weak transcription	Fetal Brain Male	brain
2	chr2:114652400-114686000	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr2:114653600-114734800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr2:114658000-114689400	Weak transcription	Fetal Heart	heart
5	chr2:114661200-114683800	Weak transcription	Colonic Mucosa	Colon
6	chr2:114662400-114676200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr2:114662800-114690600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr2:114665400-114692800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr2:114667400-114700800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr2:114667800-114705000	Weak transcription	Esophagus	oesophagus
11	chr2:114668000-114690800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr2:114668200-114692600	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr2:114668200-114695800	Weak transcription	Psoas Muscle	Psoas
14	chr2:114668200-114704800	Weak transcription	Gastric	stomach
15	chr2:114668400-114696200	Weak transcription	Small Intestine	intestine
16	chr2:114668400-114735000	Weak transcription	Stomach Mucosa	stomach
17	chr2:114668600-114692800	Weak transcription	Colon Smooth Muscle	Colon
18	chr2:114668800-114703200	Weak transcription	Brain Cingulate Gyrus	brain
19	chr2:114669000-114686400	Weak transcription	Brain Angular Gyrus	brain
20	chr2:114669200-114686400	Weak transcription	Brain Substantia Nigra	brain
21	chr2:114669400-114693400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr2:114669600-114676400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr2:114670200-114677200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr2:114670200-114679800	Genic enhancers	Primary T helper memory cells from peripheral blood 1	blood
25	chr2:114670200-114680800	Strong transcription	A549	lung
26	chr2:114670200-114680800	Strong transcription	Monocytes-CD14+_RO01746	blood
27	chr2:114670800-114677200	Strong transcription	Primary T cells fromperipheralblood	blood
28	chr2:114670800-114679400	Strong transcription	Primary B cells from peripheral blood	blood
29	chr2:114670800-114680600	Strong transcription	Primary B cells from cord blood	blood
30	chr2:114670800-114693000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr2:114670800-114717400	Strong transcription	Fetal Thymus	thymus
32	chr2:114670800-114719000	Strong transcription	Dnd41	blood
33	chr2:114671000-114676600	Genic enhancers	Primary T killer naive cells fromperipheralblood	blood
34	chr2:114671000-114677200	Strong transcription	NHDF-Ad	bronchial
35	chr2:114671000-114677400	Strong transcription	HUES64 Cell Line	embryonic stem cell
36	chr2:114671000-114677400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
37	chr2:114671000-114677800	Strong transcription	NH-A	brain
38	chr2:114671000-114678600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr2:114671000-114679000	Strong transcription	HSMM	muscle
40	chr2:114671000-114681200	Strong transcription	Primary monocytes fromperipheralblood	blood
41	chr2:114671000-114684600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr2:114671000-114695000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr2:114671000-114704800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
44	chr2:114671000-114720000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr2:114671200-114677600	Strong transcription	Osteobl	bone
46	chr2:114671200-114692800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr2:114671200-114694000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr2:114671600-114678400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
49	chr2:114672000-114723200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr2:114672400-114677000	Strong transcription	HUES48 Cell Line	embryonic stem cell

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