Variant report

Variant	rs58556274
Chromosome Location	chr2:114701041-114701042
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:114646490..114648706-chr2:114699484..114701209,2	MCF-7	breast:
2	chr2:114647031..114649796-chr2:114699549..114701545,2	MCF-7	breast:
3	chr2:114699433..114701846-chr2:114712926..114714764,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000270019	Chromatin interaction
ENSG00000115091	Chromatin interaction

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10176845	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10187400	1.00[EUR][1000 genomes]
rs10496457	1.00[EUR][1000 genomes]
rs11889509	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11889598	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11891411	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11891462	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11894827	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11895599	1.00[EUR][1000 genomes]
rs12105197	1.00[EUR][1000 genomes]
rs13384052	1.00[EUR][1000 genomes]
rs17045715	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17045864	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17046832	1.00[EUR][1000 genomes]
rs55641866	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55871409	1.00[EUR][1000 genomes]
rs55898668	1.00[EUR][1000 genomes]
rs55926723	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55952342	1.00[EUR][1000 genomes]
rs55959179	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55969528	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56235472	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57250836	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57443397	1.00[EUR][1000 genomes]
rs58242493	1.00[EUR][1000 genomes]
rs59403353	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59858371	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60313988	1.00[EUR][1000 genomes]
rs60798508	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60896642	1.00[EUR][1000 genomes]
rs60967736	1.00[EUR][1000 genomes]
rs61113571	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61179082	1.00[EUR][1000 genomes]
rs61516254	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61704468	1.00[EUR][1000 genomes]
rs6743688	1.00[EUR][1000 genomes]
rs72948697	1.00[EUR][1000 genomes]
rs72954522	1.00[EUR][1000 genomes]
rs72954542	1.00[EUR][1000 genomes]
rs72954545	1.00[EUR][1000 genomes]
rs72954552	1.00[EUR][1000 genomes]
rs72954575	1.00[EUR][1000 genomes]
rs73955093	1.00[EUR][1000 genomes]
rs73955096	1.00[EUR][1000 genomes]
rs73955101	1.00[EUR][1000 genomes]
rs73955102	1.00[EUR][1000 genomes]
rs73955460	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73955469	1.00[EUR][1000 genomes]
rs73957403	1.00[EUR][1000 genomes]
rs73957404	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73957406	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73957408	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73957422	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73957425	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73957426	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73957431	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73957432	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73957433	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:114653600-114734800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr2:114667800-114705000	Weak transcription	Esophagus	oesophagus
3	chr2:114668200-114704800	Weak transcription	Gastric	stomach
4	chr2:114668400-114735000	Weak transcription	Stomach Mucosa	stomach
5	chr2:114668800-114703200	Weak transcription	Brain Cingulate Gyrus	brain
6	chr2:114670800-114717400	Strong transcription	Fetal Thymus	thymus
7	chr2:114670800-114719000	Strong transcription	Dnd41	blood
8	chr2:114671000-114704800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr2:114671000-114720000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr2:114672000-114723200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr2:114673000-114703000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr2:114674400-114715800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr2:114676000-114706200	Weak transcription	Hela-S3	cervix
14	chr2:114676200-114704800	Weak transcription	Spleen	Spleen
15	chr2:114676600-114719800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr2:114680200-114703200	Strong transcription	Primary T cells fromperipheralblood	blood
17	chr2:114680400-114721200	Strong transcription	Primary neutrophils fromperipheralblood	blood
18	chr2:114681600-114717600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr2:114681600-114719400	Strong transcription	NH-A	brain
20	chr2:114681800-114722600	Strong transcription	Monocytes-CD14+_RO01746	blood
21	chr2:114682600-114723400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr2:114682600-114725000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr2:114683000-114715800	Strong transcription	HUES64 Cell Line	embryonic stem cell
24	chr2:114683400-114719800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr2:114683400-114720000	Strong transcription	NHDF-Ad	bronchial
26	chr2:114687000-114718200	Weak transcription	Placenta Amnion	Placenta Amnion
27	chr2:114687400-114719400	Strong transcription	Primary T helper cells fromperipheralblood	blood
28	chr2:114687600-114704800	Weak transcription	Aorta	Aorta
29	chr2:114687600-114704800	Weak transcription	Fetal Stomach	stomach
30	chr2:114688200-114715200	Strong transcription	HUES6 Cell Line	embryonic stem cell
31	chr2:114688400-114719200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
32	chr2:114688600-114719400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr2:114689000-114711000	Strong transcription	Primary T helper naive cells from peripheral blood	blood
34	chr2:114689400-114715200	Strong transcription	Rectal Mucosa Donor 31	rectum
35	chr2:114689400-114716800	Strong transcription	Placenta	Placenta
36	chr2:114691000-114707000	Strong transcription	Muscle Satellite Cultured Cells	--
37	chr2:114691600-114715400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
38	chr2:114691800-114710600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
39	chr2:114691800-114716200	Strong transcription	HUVEC	blood vessel
40	chr2:114691800-114719800	Strong transcription	HSMM	muscle
41	chr2:114693000-114716600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
42	chr2:114693200-114720000	Strong transcription	Primary T helper cells PMA-I stimulated	--
43	chr2:114694600-114702600	Weak transcription	Brain Substantia Nigra	brain
44	chr2:114695200-114701800	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
45	chr2:114695200-114720200	Strong transcription	Primary monocytes fromperipheralblood	blood
46	chr2:114695400-114715000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr2:114695600-114705800	Strong transcription	Skeletal Muscle Female	skeletal muscle
48	chr2:114695600-114706200	Strong transcription	Primary B cells from cord blood	blood
49	chr2:114695800-114702000	Strong transcription	HMEC	breast
50	chr2:114696000-114706800	Strong transcription	HUES48 Cell Line	embryonic stem cell

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