Variant report

Variant	rs73957408
Chromosome Location	chr2:114636178-114636179
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:114634689..114637227-chr2:114637787..114640303,2	K562	blood:
2	chr2:114634584..114637421-chr2:118770170..118773042,2	MCF-7	breast:
3	chr2:114512137..114514809-chr2:114634552..114636570,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000115084	Chromatin interaction
ENSG00000125633	Chromatin interaction

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10176845	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10187400	1.00[EUR][1000 genomes]
rs10496457	1.00[EUR][1000 genomes]
rs11889509	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11889598	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11891411	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11891462	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11894827	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11895599	1.00[EUR][1000 genomes]
rs12105197	1.00[EUR][1000 genomes]
rs13384052	1.00[EUR][1000 genomes]
rs17045715	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17045864	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17046832	1.00[EUR][1000 genomes]
rs17048352	1.00[EUR][1000 genomes]
rs55641866	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55871409	1.00[EUR][1000 genomes]
rs55898668	1.00[EUR][1000 genomes]
rs55926723	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55952342	1.00[EUR][1000 genomes]
rs55959179	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55969528	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56235472	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57250836	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57443397	1.00[EUR][1000 genomes]
rs58242493	1.00[EUR][1000 genomes]
rs58556274	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59403353	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59858371	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60313988	1.00[EUR][1000 genomes]
rs60779750	1.00[EUR][1000 genomes]
rs60798508	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60896642	1.00[EUR][1000 genomes]
rs60967736	1.00[EUR][1000 genomes]
rs61113571	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61179082	1.00[EUR][1000 genomes]
rs61516254	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61704468	1.00[EUR][1000 genomes]
rs6743688	1.00[EUR][1000 genomes]
rs72948697	1.00[EUR][1000 genomes]
rs72954522	1.00[EUR][1000 genomes]
rs72954542	1.00[EUR][1000 genomes]
rs72954545	1.00[EUR][1000 genomes]
rs72954552	1.00[EUR][1000 genomes]
rs72954575	1.00[EUR][1000 genomes]
rs73955093	1.00[EUR][1000 genomes]
rs73955096	1.00[EUR][1000 genomes]
rs73955101	1.00[EUR][1000 genomes]
rs73955102	1.00[EUR][1000 genomes]
rs73955460	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73955469	1.00[EUR][1000 genomes]
rs73957403	1.00[EUR][1000 genomes]
rs73957404	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73957406	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73957422	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73957425	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73957426	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73957431	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73957432	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73957433	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:114621200-114639600	Weak transcription	GM12878-XiMat	blood
2	chr2:114621400-114638400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr2:114631400-114644000	Weak transcription	Spleen	Spleen
4	chr2:114631600-114636400	Weak transcription	Left Ventricle	heart
5	chr2:114631800-114639000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr2:114632600-114636400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr2:114633400-114636400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
8	chr2:114633800-114636200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr2:114633800-114636800	Enhancers	Fetal Intestine Large	intestine
10	chr2:114633800-114636800	Enhancers	HMEC	breast
11	chr2:114633800-114637200	Enhancers	Stomach Mucosa	stomach
12	chr2:114633800-114646800	Weak transcription	Aorta	Aorta
13	chr2:114634200-114636800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr2:114634200-114636800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr2:114634200-114636800	Enhancers	Fetal Intestine Small	intestine
16	chr2:114634200-114636800	Enhancers	A549	lung
17	chr2:114634200-114637000	Enhancers	Hela-S3	cervix
18	chr2:114634200-114644800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr2:114634400-114636800	Enhancers	Primary T helper cells PMA-I stimulated	--
20	chr2:114634400-114637000	Enhancers	Primary T killer memory cells from peripheral blood	blood
21	chr2:114634400-114644200	Weak transcription	Brain Cingulate Gyrus	brain
22	chr2:114634600-114636400	Enhancers	Primary T helper naive cells from peripheral blood	blood
23	chr2:114634600-114637200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
24	chr2:114634600-114637800	Weak transcription	Fetal Brain Male	brain
25	chr2:114634600-114639200	Weak transcription	Primary hematopoietic stem cells	blood
26	chr2:114634600-114639200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr2:114634600-114642000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr2:114634600-114644000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr2:114634600-114644000	Weak transcription	H9 Cell Line	embryonic stem cell
30	chr2:114634600-114644000	Weak transcription	HUES6 Cell Line	embryonic stem cell
31	chr2:114634600-114644000	Weak transcription	Pancreas	Pancrea
32	chr2:114634600-114645800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
33	chr2:114634600-114646000	Weak transcription	Brain Anterior Caudate	brain
34	chr2:114634600-114646200	Weak transcription	Cortex derived primary cultured neurospheres	brain
35	chr2:114634800-114636600	Enhancers	Primary T helper cells fromperipheralblood	blood
36	chr2:114634800-114636600	Enhancers	NHEK	skin
37	chr2:114634800-114636800	Enhancers	NHLF	lung
38	chr2:114634800-114637200	Enhancers	Primary T cells from cord blood	blood
39	chr2:114634800-114644200	Weak transcription	HUES48 Cell Line	embryonic stem cell
40	chr2:114635000-114636200	Enhancers	HSMM	muscle
41	chr2:114635000-114636800	Enhancers	Primary B cells from peripheral blood	blood
42	chr2:114635000-114637000	Enhancers	NHDF-Ad	bronchial
43	chr2:114635000-114637600	Enhancers	HSMMtube	muscle
44	chr2:114635000-114644200	Weak transcription	Esophagus	oesophagus
45	chr2:114635200-114636200	Enhancers	Osteobl	bone
46	chr2:114635200-114636600	Enhancers	Fetal Lung	lung
47	chr2:114635200-114636800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr2:114635400-114646000	Weak transcription	Fetal Muscle Leg	muscle
49	chr2:114635600-114637000	Enhancers	Fetal Stomach	stomach
50	chr2:114635600-114637000	Enhancers	HepG2	liver

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