Variant report

Variant	rs73957425
Chromosome Location	chr2:114674195-114674196
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:114668742..114673140-chr2:114673831..114676869,6	K562	blood:
2	chr2:114512877..114515552-chr2:114673985..114678016,3	K562	blood:
3	chr2:114672608..114674556-chr2:114681471..114684124,2	K562	blood:
4	chr2:114672608..114675280-chr2:114681471..114684124,3	K562	blood:
5	chr2:114650237..114652032-chr2:114672762..114674303,2	MCF-7	breast:
6	chr2:114669911..114672374-chr2:114673667..114676580,4	K562	blood:
7	chr2:114664146..114665930-chr2:114672543..114675415,2	K562	blood:
8	chr2:114645266..114650561-chr2:114670334..114676393,6	MCF-7	breast:
9	chr2:114662832..114665997-chr2:114671903..114675415,3	K562	blood:
10	chr2:114666697..114668680-chr2:114673131..114675715,2	K562	blood:
11	chr2:114673307..114674958-chr2:114678175..114681127,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000115091	Chromatin interaction
ENSG00000115084	Chromatin interaction
ENSG00000270019	Chromatin interaction

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10176845	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10187400	1.00[EUR][1000 genomes]
rs10496457	1.00[EUR][1000 genomes]
rs11889509	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11889598	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11891411	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11891462	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11894827	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11895599	1.00[EUR][1000 genomes]
rs12105197	1.00[EUR][1000 genomes]
rs13384052	1.00[EUR][1000 genomes]
rs17045715	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17045864	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17046832	1.00[EUR][1000 genomes]
rs17048352	1.00[EUR][1000 genomes]
rs55641866	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55871409	1.00[EUR][1000 genomes]
rs55898668	1.00[EUR][1000 genomes]
rs55926723	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55952342	1.00[EUR][1000 genomes]
rs55959179	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55969528	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56235472	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57250836	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57443397	1.00[EUR][1000 genomes]
rs58242493	1.00[EUR][1000 genomes]
rs58556274	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59403353	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59858371	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60313988	1.00[EUR][1000 genomes]
rs60798508	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60896642	1.00[EUR][1000 genomes]
rs60967736	1.00[EUR][1000 genomes]
rs61113571	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61179082	1.00[EUR][1000 genomes]
rs61516254	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61704468	1.00[EUR][1000 genomes]
rs6743688	1.00[EUR][1000 genomes]
rs72948697	1.00[EUR][1000 genomes]
rs72954522	1.00[EUR][1000 genomes]
rs72954542	1.00[EUR][1000 genomes]
rs72954545	1.00[EUR][1000 genomes]
rs72954552	1.00[EUR][1000 genomes]
rs72954575	1.00[EUR][1000 genomes]
rs73955093	1.00[EUR][1000 genomes]
rs73955096	1.00[EUR][1000 genomes]
rs73955101	1.00[EUR][1000 genomes]
rs73955102	1.00[EUR][1000 genomes]
rs73955460	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73955469	1.00[EUR][1000 genomes]
rs73957403	1.00[EUR][1000 genomes]
rs73957404	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73957406	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73957408	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73957422	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73957426	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73957431	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73957432	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73957433	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:114652200-114700600	Weak transcription	Fetal Brain Male	brain
2	chr2:114652400-114686000	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr2:114653600-114734800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr2:114654600-114674600	Weak transcription	Hela-S3	cervix
5	chr2:114654600-114675400	Weak transcription	Fetal Stomach	stomach
6	chr2:114658000-114675400	Weak transcription	Aorta	Aorta
7	chr2:114658000-114689400	Weak transcription	Fetal Heart	heart
8	chr2:114658400-114674200	Weak transcription	Fetal Intestine Large	intestine
9	chr2:114661200-114683800	Weak transcription	Colonic Mucosa	Colon
10	chr2:114662200-114675200	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr2:114662400-114676200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr2:114662600-114674400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr2:114662800-114690600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr2:114663800-114674600	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr2:114663800-114674800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr2:114664400-114674600	Weak transcription	Fetal Lung	lung
17	chr2:114665400-114675200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr2:114665400-114692800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr2:114667400-114700800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr2:114667800-114705000	Weak transcription	Esophagus	oesophagus
21	chr2:114668000-114675200	Weak transcription	Lung	lung
22	chr2:114668000-114675600	Weak transcription	Rectal Smooth Muscle	rectum
23	chr2:114668000-114676000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr2:114668000-114690800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr2:114668200-114675000	Weak transcription	Ovary	ovary
26	chr2:114668200-114675400	Weak transcription	Pancreas	Pancrea
27	chr2:114668200-114692600	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr2:114668200-114695800	Weak transcription	Psoas Muscle	Psoas
29	chr2:114668200-114704800	Weak transcription	Gastric	stomach
30	chr2:114668400-114674200	Weak transcription	NHLF	lung
31	chr2:114668400-114674800	Weak transcription	Stomach Smooth Muscle	stomach
32	chr2:114668400-114675200	Weak transcription	Left Ventricle	heart
33	chr2:114668400-114675400	Weak transcription	Thymus	Thymus
34	chr2:114668400-114696200	Weak transcription	Small Intestine	intestine
35	chr2:114668400-114735000	Weak transcription	Stomach Mucosa	stomach
36	chr2:114668600-114674800	Weak transcription	Fetal Brain Female	brain
37	chr2:114668600-114674800	Weak transcription	HSMMtube	muscle
38	chr2:114668600-114692800	Weak transcription	Colon Smooth Muscle	Colon
39	chr2:114668800-114674600	Weak transcription	Brain Inferior Temporal Lobe	brain
40	chr2:114668800-114675000	Weak transcription	Fetal Kidney	kidney
41	chr2:114668800-114675400	Weak transcription	Brain Hippocampus Middle	brain
42	chr2:114668800-114675400	Weak transcription	Spleen	Spleen
43	chr2:114668800-114676000	Weak transcription	Fetal Intestine Small	intestine
44	chr2:114668800-114703200	Weak transcription	Brain Cingulate Gyrus	brain
45	chr2:114669000-114675200	Weak transcription	Brain Anterior Caudate	brain
46	chr2:114669000-114675400	Weak transcription	Fetal Muscle Trunk	muscle
47	chr2:114669000-114686400	Weak transcription	Brain Angular Gyrus	brain
48	chr2:114669200-114686400	Weak transcription	Brain Substantia Nigra	brain
49	chr2:114669400-114693400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr2:114669600-114675000	Weak transcription	Brain Germinal Matrix	brain

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