Variant report

Variant	rs11891411
Chromosome Location	chr2:114633630-114633631
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:114595700..114597875-chr2:114633557..114635460,2	MCF-7	breast:
2	chr2:114599733..114601786-chr2:114631688..114635727,3	MCF-7	breast:
3	chr2:114630936..114633631-chr2:114645120..114648314,3	MCF-7	breast:
4	chr2:114623730..114628416-chr2:114629384..114634223,5	K562	blood:

Variant related genes	Relation type
ENSG00000115091	Chromatin interaction
ENSG00000270019	Chromatin interaction
ENSG00000228857	Chromatin interaction

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10176845	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10187400	1.00[EUR][1000 genomes]
rs10496457	1.00[EUR][1000 genomes]
rs11889509	0.94[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11889598	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11891462	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11894827	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11895599	1.00[EUR][1000 genomes]
rs12105197	1.00[EUR][1000 genomes]
rs13384052	1.00[EUR][1000 genomes]
rs17045715	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17045864	0.94[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17046832	1.00[EUR][1000 genomes]
rs17048352	1.00[EUR][1000 genomes]
rs55641866	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55871409	1.00[EUR][1000 genomes]
rs55898668	1.00[EUR][1000 genomes]
rs55926723	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55952342	1.00[EUR][1000 genomes]
rs55959179	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55969528	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56235472	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57250836	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57443397	1.00[EUR][1000 genomes]
rs58242493	1.00[EUR][1000 genomes]
rs58556274	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59403353	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59858371	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60313988	1.00[EUR][1000 genomes]
rs60779750	1.00[EUR][1000 genomes]
rs60798508	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60896642	1.00[EUR][1000 genomes]
rs60967736	1.00[EUR][1000 genomes]
rs61113571	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61179082	1.00[EUR][1000 genomes]
rs61516254	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61704468	1.00[EUR][1000 genomes]
rs6743688	1.00[EUR][1000 genomes]
rs72948697	1.00[EUR][1000 genomes]
rs72954522	1.00[EUR][1000 genomes]
rs72954542	1.00[EUR][1000 genomes]
rs72954545	1.00[EUR][1000 genomes]
rs72954552	1.00[EUR][1000 genomes]
rs72954575	1.00[EUR][1000 genomes]
rs73955093	1.00[EUR][1000 genomes]
rs73955096	1.00[EUR][1000 genomes]
rs73955101	1.00[EUR][1000 genomes]
rs73955102	1.00[EUR][1000 genomes]
rs73955460	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73955469	1.00[EUR][1000 genomes]
rs73957403	1.00[EUR][1000 genomes]
rs73957404	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73957406	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73957408	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73957422	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73957425	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73957426	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73957431	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73957432	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73957433	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:114621200-114639600	Weak transcription	GM12878-XiMat	blood
2	chr2:114621400-114638400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr2:114625800-114633800	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr2:114626400-114635000	Weak transcription	Primary B cells from cord blood	blood
5	chr2:114626600-114634200	Weak transcription	Thymus	Thymus
6	chr2:114626600-114634400	Weak transcription	Pancreas	Pancrea
7	chr2:114626800-114635000	Weak transcription	Primary B cells from peripheral blood	blood
8	chr2:114630200-114634200	Weak transcription	NHLF	lung
9	chr2:114630200-114634600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr2:114630200-114635000	Weak transcription	HSMM	muscle
11	chr2:114630200-114635200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr2:114630400-114634200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr2:114630400-114635000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr2:114630400-114635000	Weak transcription	HSMMtube	muscle
15	chr2:114630400-114635000	Weak transcription	NHDF-Ad	bronchial
16	chr2:114630400-114635200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr2:114630400-114635200	Weak transcription	Osteobl	bone
18	chr2:114630400-114635400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr2:114631400-114635200	Weak transcription	Small Intestine	intestine
20	chr2:114631400-114644000	Weak transcription	Spleen	Spleen
21	chr2:114631600-114636400	Weak transcription	Left Ventricle	heart
22	chr2:114631800-114634400	Weak transcription	NH-A	brain
23	chr2:114631800-114635400	Weak transcription	Adipose Nuclei	Adipose
24	chr2:114631800-114639000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr2:114632000-114633800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr2:114632000-114633800	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr2:114632000-114634200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr2:114632000-114634200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr2:114632000-114634200	Weak transcription	Hela-S3	cervix
30	chr2:114632000-114635200	Weak transcription	Muscle Satellite Cultured Cells	--
31	chr2:114632000-114635600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr2:114632200-114633800	Weak transcription	HMEC	breast
33	chr2:114632400-114633800	Weak transcription	Rectal Mucosa Donor 29	rectum
34	chr2:114632400-114634000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
35	chr2:114632400-114635400	Weak transcription	HUVEC	blood vessel
36	chr2:114632600-114636400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr2:114632800-114634200	Enhancers	Primary T helper cells fromperipheralblood	blood
38	chr2:114633000-114633800	Enhancers	Monocytes-CD14+_RO01746	blood
39	chr2:114633200-114634200	Enhancers	Fetal Thymus	thymus
40	chr2:114633400-114633800	Enhancers	Primary T helper cells PMA-I stimulated	--
41	chr2:114633400-114634000	Enhancers	Primary T cells from cord blood	blood
42	chr2:114633400-114634200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
43	chr2:114633400-114634800	Weak transcription	Primary monocytes fromperipheralblood	blood
44	chr2:114633400-114636000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
45	chr2:114633400-114636400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
46	chr2:114633600-114634000	Enhancers	Primary T helper naive cells from peripheral blood	blood
47	chr2:114633600-114634000	Enhancers	Primary T killer memory cells from peripheral blood	blood
48	chr2:114633600-114634200	Enhancers	Dnd41	blood
49	chr2:114633600-114636000	Enhancers	Primary T killer naive cells fromperipheralblood	blood

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