Variant report

Variant	rs17045715
Chromosome Location	chr2:114657338-114657339
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:114655812..114657969-chr2:114659213..114661113,3	MCF-7	breast:
2	chr2:114656542..114659348-chr2:114663308..114664810,2	K562	blood:

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10176845	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10187400	1.00[EUR][1000 genomes]
rs10496457	1.00[EUR][1000 genomes]
rs11889509	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11889598	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11891411	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11891462	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11894827	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11895599	1.00[EUR][1000 genomes]
rs12105197	1.00[EUR][1000 genomes]
rs13384052	1.00[EUR][1000 genomes]
rs17045864	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17046832	1.00[EUR][1000 genomes]
rs17048352	1.00[EUR][1000 genomes]
rs55641866	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55871409	1.00[EUR][1000 genomes]
rs55898668	1.00[EUR][1000 genomes]
rs55926723	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55952342	1.00[EUR][1000 genomes]
rs55959179	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55969528	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56235472	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57250836	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57443397	1.00[EUR][1000 genomes]
rs58242493	1.00[EUR][1000 genomes]
rs58556274	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59403353	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59858371	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60313988	1.00[EUR][1000 genomes]
rs60798508	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60896642	1.00[EUR][1000 genomes]
rs60967736	1.00[EUR][1000 genomes]
rs61113571	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61179082	1.00[EUR][1000 genomes]
rs61516254	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61704468	1.00[EUR][1000 genomes]
rs6743688	1.00[EUR][1000 genomes]
rs72948697	1.00[EUR][1000 genomes]
rs72954522	1.00[EUR][1000 genomes]
rs72954542	1.00[EUR][1000 genomes]
rs72954545	1.00[EUR][1000 genomes]
rs72954552	1.00[EUR][1000 genomes]
rs72954575	1.00[EUR][1000 genomes]
rs73955093	1.00[EUR][1000 genomes]
rs73955096	1.00[EUR][1000 genomes]
rs73955101	1.00[EUR][1000 genomes]
rs73955102	1.00[EUR][1000 genomes]
rs73955460	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73955469	1.00[EUR][1000 genomes]
rs73957403	1.00[EUR][1000 genomes]
rs73957404	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73957406	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73957408	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73957422	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73957425	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73957426	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73957431	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73957432	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73957433	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:114648600-114657800	Weak transcription	Gastric	stomach
2	chr2:114648600-114667600	Weak transcription	Lung	lung
3	chr2:114649200-114661200	Weak transcription	Fetal Muscle Trunk	muscle
4	chr2:114649200-114673200	Weak transcription	Placenta	Placenta
5	chr2:114649600-114661000	Weak transcription	Fetal Muscle Leg	muscle
6	chr2:114650200-114658400	Enhancers	Adipose Nuclei	Adipose
7	chr2:114650200-114658400	Enhancers	Stomach Mucosa	stomach
8	chr2:114650200-114661000	Weak transcription	Right Ventricle	heart
9	chr2:114651600-114658000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr2:114652000-114658000	Weak transcription	Pancreas	Pancrea
11	chr2:114652000-114667600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr2:114652000-114667600	Weak transcription	Esophagus	oesophagus
13	chr2:114652200-114658000	Enhancers	Duodenum Mucosa	Duodenum
14	chr2:114652200-114700600	Weak transcription	Fetal Brain Male	brain
15	chr2:114652400-114657800	Weak transcription	Aorta	Aorta
16	chr2:114652400-114657800	Weak transcription	Colonic Mucosa	Colon
17	chr2:114652400-114660400	Weak transcription	Fetal Kidney	kidney
18	chr2:114652400-114686000	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr2:114653000-114658400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr2:114653000-114659600	Weak transcription	Brain Cingulate Gyrus	brain
21	chr2:114653200-114658200	Enhancers	Liver	Liver
22	chr2:114653200-114658400	Enhancers	A549	lung
23	chr2:114653200-114659200	Enhancers	Breast Myoepithelial Primary Cells	Breast
24	chr2:114653200-114662400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
25	chr2:114653400-114659000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
26	chr2:114653400-114662000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
27	chr2:114653400-114672600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr2:114653600-114658200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr2:114653600-114734800	Weak transcription	H9 Cell Line	embryonic stem cell
30	chr2:114653800-114657400	Enhancers	Duodenum Smooth Muscle	Duodenum
31	chr2:114653800-114658000	Weak transcription	Spleen	Spleen
32	chr2:114653800-114658400	Enhancers	Osteobl	bone
33	chr2:114653800-114658600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr2:114653800-114659000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr2:114654000-114657400	Enhancers	Skeletal Muscle Male	skeletal muscle
36	chr2:114654000-114657600	Enhancers	Pancreatic Islets	Pancreatic Islet
37	chr2:114654000-114660400	Enhancers	Primary B cells from peripheral blood	blood
38	chr2:114654000-114670000	Enhancers	Primary neutrophils fromperipheralblood	blood
39	chr2:114654200-114658000	Enhancers	Colon Smooth Muscle	Colon
40	chr2:114654200-114659200	Enhancers	Monocytes-CD14+_RO01746	blood
41	chr2:114654400-114657800	Weak transcription	Brain Angular Gyrus	brain
42	chr2:114654400-114667600	Weak transcription	Thymus	Thymus
43	chr2:114654600-114657400	Enhancers	Primary T helper naive cells from peripheral blood	blood
44	chr2:114654600-114657400	Enhancers	Primary T killer memory cells from peripheral blood	blood
45	chr2:114654600-114658400	Weak transcription	Right Atrium	heart
46	chr2:114654600-114674600	Weak transcription	Hela-S3	cervix
47	chr2:114654600-114675400	Weak transcription	Fetal Stomach	stomach
48	chr2:114654800-114658000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr2:114654800-114658200	Enhancers	Muscle Satellite Cultured Cells	--
50	chr2:114654800-114659000	Genic enhancers	Primary B cells from cord blood	blood

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