Variant report

Variant	rs10496457
Chromosome Location	chr2:114745734-114745735
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:114737901..114740134-chr2:114744363..114746744,2	K562	blood:
2	chr2:114737041..114739401-chr2:114744363..114746077,2	K562	blood:

Variant related genes	Relation type
ENSG00000234199	Chromatin interaction
ENSG00000243179	Chromatin interaction

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10176845	1.00[EUR][1000 genomes]
rs10187400	1.00[EUR][1000 genomes]
rs11889509	1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs11889598	1.00[EUR][1000 genomes]
rs11891411	1.00[EUR][1000 genomes]
rs11891462	1.00[EUR][1000 genomes]
rs11894827	1.00[EUR][1000 genomes]
rs11895599	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12105197	1.00[EUR][1000 genomes]
rs13384052	1.00[EUR][1000 genomes]
rs17045715	1.00[EUR][1000 genomes]
rs17045864	1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs17046832	0.93[YRI][hapmap];1.00[EUR][1000 genomes]
rs55641866	1.00[EUR][1000 genomes]
rs55871409	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55898668	1.00[EUR][1000 genomes]
rs55926723	1.00[EUR][1000 genomes]
rs55952342	1.00[EUR][1000 genomes]
rs55959179	1.00[EUR][1000 genomes]
rs55969528	1.00[EUR][1000 genomes]
rs56235472	1.00[EUR][1000 genomes]
rs57250836	1.00[EUR][1000 genomes]
rs57443397	1.00[EUR][1000 genomes]
rs58242493	1.00[EUR][1000 genomes]
rs58556274	1.00[EUR][1000 genomes]
rs59403353	1.00[EUR][1000 genomes]
rs59858371	1.00[EUR][1000 genomes]
rs60313988	1.00[EUR][1000 genomes]
rs60798508	1.00[EUR][1000 genomes]
rs60967736	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61113571	1.00[EUR][1000 genomes]
rs61179082	1.00[EUR][1000 genomes]
rs61516254	1.00[EUR][1000 genomes]
rs61704468	1.00[EUR][1000 genomes]
rs6743688	1.00[EUR][1000 genomes]
rs72948697	1.00[EUR][1000 genomes]
rs72954522	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72954542	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72954545	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72954552	1.00[EUR][1000 genomes]
rs72954575	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73955093	1.00[EUR][1000 genomes]
rs73955096	1.00[EUR][1000 genomes]
rs73955101	1.00[EUR][1000 genomes]
rs73955102	1.00[EUR][1000 genomes]
rs73955460	1.00[EUR][1000 genomes]
rs73955469	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73957403	1.00[EUR][1000 genomes]
rs73957404	1.00[EUR][1000 genomes]
rs73957406	1.00[EUR][1000 genomes]
rs73957408	1.00[EUR][1000 genomes]
rs73957425	1.00[EUR][1000 genomes]
rs73957426	1.00[EUR][1000 genomes]
rs73957431	1.00[EUR][1000 genomes]
rs73957432	1.00[EUR][1000 genomes]
rs73957433	1.00[EUR][1000 genomes]

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:114734000-114746000	Weak transcription	Aorta	Aorta
2	chr2:114734000-114751800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr2:114734400-114749800	Weak transcription	Primary T cells fromperipheralblood	blood
4	chr2:114736200-114761000	Weak transcription	HSMMtube	muscle
5	chr2:114737400-114746000	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr2:114737600-114751400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr2:114737800-114754400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr2:114738000-114748800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr2:114738600-114749400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr2:114739600-114752600	Weak transcription	NH-A	brain
11	chr2:114741200-114761000	Weak transcription	HSMM	muscle
12	chr2:114742200-114746200	Enhancers	HepG2	liver
13	chr2:114743000-114751000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr2:114745400-114749000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links