Variant report

Variant	rs55952342
Chromosome Location	chr2:114598471-114598472
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:114596973..114598913-chr2:114602425..114605423,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SLC35F5-3	chr2:114598182-114598603	NONHSAT073841

rs_ID	r²[population]
rs10176845	1.00[EUR][1000 genomes]
rs10187400	1.00[EUR][1000 genomes]
rs10496457	1.00[EUR][1000 genomes]
rs11889509	1.00[EUR][1000 genomes]
rs11889598	1.00[EUR][1000 genomes]
rs11891411	1.00[EUR][1000 genomes]
rs11891462	1.00[EUR][1000 genomes]
rs11894827	1.00[EUR][1000 genomes]
rs11895599	1.00[EUR][1000 genomes]
rs12105197	1.00[EUR][1000 genomes]
rs13384052	1.00[EUR][1000 genomes]
rs17045715	1.00[EUR][1000 genomes]
rs17045864	1.00[EUR][1000 genomes]
rs17046832	1.00[EUR][1000 genomes]
rs17048352	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4255968	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55641866	1.00[EUR][1000 genomes]
rs55871409	1.00[EUR][1000 genomes]
rs55898668	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55926723	1.00[EUR][1000 genomes]
rs55959179	1.00[EUR][1000 genomes]
rs55969528	1.00[EUR][1000 genomes]
rs56235472	1.00[EUR][1000 genomes]
rs57250836	1.00[EUR][1000 genomes]
rs57443397	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58242493	1.00[EUR][1000 genomes]
rs58556274	1.00[EUR][1000 genomes]
rs59403353	1.00[EUR][1000 genomes]
rs59858371	1.00[EUR][1000 genomes]
rs60313988	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60779750	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60798508	1.00[EUR][1000 genomes]
rs60896642	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60967736	1.00[EUR][1000 genomes]
rs61113571	1.00[EUR][1000 genomes]
rs61179082	1.00[EUR][1000 genomes]
rs61516254	1.00[EUR][1000 genomes]
rs61704468	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6743688	1.00[EUR][1000 genomes]
rs72948697	1.00[EUR][1000 genomes]
rs72954522	1.00[EUR][1000 genomes]
rs72954542	1.00[EUR][1000 genomes]
rs72954545	1.00[EUR][1000 genomes]
rs72954552	1.00[EUR][1000 genomes]
rs72954575	1.00[EUR][1000 genomes]
rs73955093	1.00[EUR][1000 genomes]
rs73955096	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73955101	1.00[EUR][1000 genomes]
rs73955102	1.00[EUR][1000 genomes]
rs73955460	1.00[EUR][1000 genomes]
rs73955469	1.00[EUR][1000 genomes]
rs73957403	1.00[EUR][1000 genomes]
rs73957404	1.00[EUR][1000 genomes]
rs73957406	1.00[EUR][1000 genomes]
rs73957408	1.00[EUR][1000 genomes]
rs73957425	1.00[EUR][1000 genomes]
rs73957426	1.00[EUR][1000 genomes]
rs73957431	1.00[EUR][1000 genomes]
rs73957432	1.00[EUR][1000 genomes]
rs73957433	1.00[EUR][1000 genomes]

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:114574200-114603600	Weak transcription	Primary B cells from cord blood	blood
2	chr2:114586400-114601000	Weak transcription	Primary T cells from cord blood	blood
3	chr2:114589200-114600200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr2:114589200-114600200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr2:114589200-114600200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr2:114592800-114599400	Weak transcription	Placenta	Placenta
7	chr2:114595600-114598600	Enhancers	HepG2	liver
8	chr2:114596400-114621000	Weak transcription	Aorta	Aorta
9	chr2:114596600-114603400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr2:114596600-114611600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr2:114596800-114632800	Weak transcription	Primary T helper cells fromperipheralblood	blood
12	chr2:114597400-114599200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr2:114597400-114600200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr2:114597600-114598600	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr2:114597600-114631400	Weak transcription	Primary T helper cells PMA-I stimulated	--
16	chr2:114598000-114599200	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr2:114598200-114599000	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr2:114598200-114599200	Enhancers	iPS-20b Cell Line	embryonic stem cell
19	chr2:114598200-114600800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr2:114598400-114598800	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr2:114598400-114599000	Weak transcription	HUES64 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links