Variant report

Variant rs10409905
Chromosome Location chr19:20979952-20979953
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:96 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:20960000-20983800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
2 chr19:20960000-20987600 Weak transcription Brain Substantia Nigra brain
3 chr19:20960000-20987800 Weak transcription Placenta Amnion Placenta Amnion
4 chr19:20960200-20987200 Weak transcription Colon Smooth Muscle Colon
5 chr19:20960200-20990400 ZNF genes & repeats H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
6 chr19:20961200-20989600 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
7 chr19:20966400-20985400 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Female --
8 chr19:20968400-20980600 Weak transcription Colonic Mucosa Colon
9 chr19:20969600-20981000 Weak transcription Psoas Muscle Psoas
10 chr19:20971000-20980600 Weak transcription Muscle Satellite Cultured Cells --
11 chr19:20974800-20992000 ZNF genes & repeats hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
12 chr19:20975200-20982200 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
13 chr19:20975200-20983600 ZNF genes & repeats Primary T helper cells fromperipheralblood blood
14 chr19:20975200-20983600 ZNF genes & repeats Monocytes-CD14+_RO01746 blood
15 chr19:20975200-20984800 ZNF genes & repeats H9 Derived Neuron Cultured Cells ES cell derived
16 chr19:20975200-20989400 ZNF genes & repeats Primary hematopoietic stem cells blood
17 chr19:20975200-20992000 ZNF genes & repeats iPS-20b Cell Line embryonic stem cell
18 chr19:20975400-20982000 Weak transcription Brain Anterior Caudate brain
19 chr19:20975600-20980200 Strong transcription Breast Myoepithelial Primary Cells Breast
20 chr19:20975600-20981600 ZNF genes & repeats Brain Germinal Matrix brain
21 chr19:20975600-20984400 Strong transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
22 chr19:20975600-20984800 ZNF genes & repeats ES-I3 Cell Line embryonic stem cell
23 chr19:20975600-20985400 ZNF genes & repeats Ganglion Eminence derived primary cultured neurospheres brain
24 chr19:20975600-20989200 ZNF genes & repeats Primary hematopoietic stem cells short term culture blood
25 chr19:20975800-20981200 Weak transcription Duodenum Smooth Muscle Duodenum
26 chr19:20976200-20982800 Strong transcription Primary T helper naive cells from peripheral blood blood
27 chr19:20976200-20983400 ZNF genes & repeats Thymus Thymus
28 chr19:20976200-20983600 ZNF genes & repeats Primary neutrophils fromperipheralblood blood
29 chr19:20976400-20980000 Strong transcription Primary T cells effector/memory enriched fromperipheralblood blood
30 chr19:20976400-20985000 ZNF genes & repeats Fetal Lung lung
31 chr19:20976600-20980600 ZNF genes & repeats Primary T regulatory cells fromperipheralblood blood
32 chr19:20976600-20981200 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
33 chr19:20976600-20981600 ZNF genes & repeats HUES6 Cell Line embryonic stem cell
34 chr19:20976600-20981800 ZNF genes & repeats iPS-18 Cell Line embryonic stem cell
35 chr19:20976600-20990800 ZNF genes & repeats Dnd41 blood
36 chr19:20976800-20990800 ZNF genes & repeats HUES48 Cell Line embryonic stem cell
37 chr19:20977000-20983400 Weak transcription NHDF-Ad bronchial
38 chr19:20977000-20991200 ZNF genes & repeats HUES64 Cell Line embryonic stem cell
39 chr19:20977400-20980600 Weak transcription ES-WA7 Cell Line embryonic stem cell
40 chr19:20977600-20980000 ZNF genes & repeats Sigmoid Colon Sigmoid Colon
41 chr19:20977600-20981400 ZNF genes & repeats Fetal Stomach stomach
42 chr19:20977600-20981600 ZNF genes & repeats Duodenum Mucosa Duodenum
43 chr19:20977600-20983200 ZNF genes & repeats Fetal Intestine Small intestine
44 chr19:20977600-20983400 ZNF genes & repeats Primary B cells from cord blood blood
45 chr19:20977600-20983600 ZNF genes & repeats Primary T cells fromperipheralblood blood
46 chr19:20977600-20991000 ZNF genes & repeats Primary T cells from cord blood blood
47 chr19:20977800-20980000 ZNF genes & repeats H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
48 chr19:20977800-20980000 ZNF genes & repeats Lung lung
49 chr19:20977800-20980800 ZNF genes & repeats hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
50 chr19:20977800-20983200 ZNF genes & repeats H1 Derived Mesenchymal Stem Cells ES cell derived

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