The 2.0 version of rSNPBase

Variant report

Variant rs28809326
Chromosome Location chr19:20973799-20973800
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:70 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:20959600-20978200 Weak transcription Spleen Spleen
2 chr19:20959800-20978400 Weak transcription Skeletal Muscle Male skeletal muscle
3 chr19:20960000-20975600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
4 chr19:20960000-20976200 Weak transcription H9 Cell Line embryonic stem cell
5 chr19:20960000-20976600 Weak transcription ES-WA7 Cell Line embryonic stem cell
6 chr19:20960000-20977600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
7 chr19:20960000-20977600 Weak transcription Brain Hippocampus Middle brain
8 chr19:20960000-20978000 Weak transcription Brain Inferior Temporal Lobe brain
9 chr19:20960000-20978200 Weak transcription Pancreas Pancrea
10 chr19:20960000-20978400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
11 chr19:20960000-20978400 Weak transcription Brain Cingulate Gyrus brain
12 chr19:20960000-20978400 Weak transcription HSMM muscle
13 chr19:20960000-20983800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
14 chr19:20960000-20987600 Weak transcription Brain Substantia Nigra brain
15 chr19:20960000-20987800 Weak transcription Placenta Amnion Placenta Amnion
16 chr19:20960200-20979600 Weak transcription Pancreatic Islets Pancreatic Islet
17 chr19:20960200-20979600 Weak transcription NH-A brain
18 chr19:20960200-20987200 Weak transcription Colon Smooth Muscle Colon
19 chr19:20960200-20990400 ZNF genes & repeats H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
20 chr19:20960800-20976600 Weak transcription iPS-15b Cell Line embryonic stem cell
21 chr19:20961200-20989600 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
22 chr19:20962400-20978400 Weak transcription Osteobl bone
23 chr19:20964000-20975600 Weak transcription Breast Myoepithelial Primary Cells Breast
24 chr19:20965000-20975400 ZNF genes & repeats Dnd41 blood
25 chr19:20966400-20985400 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Female --
26 chr19:20966800-20978600 Weak transcription Placenta Placenta
27 chr19:20967600-20978200 Weak transcription Primary T killer memory cells from peripheral blood blood
28 chr19:20967800-20978400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
29 chr19:20968000-20977800 Weak transcription Fetal Kidney kidney
30 chr19:20968000-20978400 Weak transcription HepG2 liver
31 chr19:20968200-20975400 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
32 chr19:20968200-20978600 Weak transcription Skeletal Muscle Female skeletal muscle
33 chr19:20968400-20975200 Weak transcription Duodenum Smooth Muscle Duodenum
34 chr19:20968400-20976200 Weak transcription Primary T helper naive cells from peripheral blood blood
35 chr19:20968400-20976600 Weak transcription HMEC breast
36 chr19:20968400-20978400 Weak transcription Adipose Nuclei Adipose
37 chr19:20968400-20979600 Weak transcription Rectal Smooth Muscle rectum
38 chr19:20968400-20980600 Weak transcription Colonic Mucosa Colon
39 chr19:20968600-20975600 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
40 chr19:20968600-20976400 Weak transcription Fetal Lung lung
41 chr19:20968800-20975600 Weak transcription Sigmoid Colon Sigmoid Colon
42 chr19:20968800-20976400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
43 chr19:20968800-20977800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
44 chr19:20968800-20978200 Weak transcription Primary T helper 17 cells PMA-I stimulated --
45 chr19:20968800-20978400 Weak transcription Left Ventricle heart
46 chr19:20969000-20975600 Weak transcription ES-I3 Cell Line embryonic stem cell
47 chr19:20969400-20974800 Weak transcription HUES48 Cell Line embryonic stem cell
48 chr19:20969600-20974800 Weak transcription HUES64 Cell Line embryonic stem cell
49 chr19:20969600-20981000 Weak transcription Psoas Muscle Psoas
50 chr19:20969800-20975200 Weak transcription H1 Cell Line embryonic stem cell

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Last update: Aug 31, 2015