The 2.0 version of rSNPBase

Variant report

Variant rs10424826
Chromosome Location chr19:20960361-20960362
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:93 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:20958800-20960400 Active TSS Ganglion Eminence derived primary cultured neurospheres brain
2 chr19:20958800-20960400 Active TSS Fetal Brain Female brain
3 chr19:20959000-20960400 Active TSS hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
4 chr19:20959000-20960400 Active TSS HUES64 Cell Line embryonic stem cell
5 chr19:20959000-20960400 Active TSS iPS-18 Cell Line embryonic stem cell
6 chr19:20959000-20960400 Active TSS iPS-20b Cell Line embryonic stem cell
7 chr19:20959000-20960400 Active TSS Primary hematopoietic stem cells short term culture blood
8 chr19:20959000-20960600 Active TSS H1 Cell Line embryonic stem cell
9 chr19:20959000-20960600 Active TSS HUES48 Cell Line embryonic stem cell
10 chr19:20959000-20960600 Active TSS GM12878-XiMat blood
11 chr19:20959000-20960800 Active TSS hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
12 chr19:20959000-20960800 Active TSS iPS-15b Cell Line embryonic stem cell
13 chr19:20959200-20960600 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Male --
14 chr19:20959400-20960400 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Female --
15 chr19:20959600-20963400 Weak transcription Small Intestine intestine
16 chr19:20959600-20978200 Weak transcription Spleen Spleen
17 chr19:20959800-20960600 Enhancers Primary Natural Killer cells fromperipheralblood blood
18 chr19:20959800-20963600 Weak transcription Primary T helper naive cells from peripheral blood blood
19 chr19:20959800-20963600 Weak transcription Lung lung
20 chr19:20959800-20963600 Weak transcription Sigmoid Colon Sigmoid Colon
21 chr19:20959800-20967200 Weak transcription Primary T killer naive cells fromperipheralblood blood
22 chr19:20959800-20967600 Weak transcription Left Ventricle heart
23 chr19:20959800-20967800 Weak transcription Aorta Aorta
24 chr19:20959800-20970400 Weak transcription Gastric stomach
25 chr19:20959800-20978400 Weak transcription Skeletal Muscle Male skeletal muscle
26 chr19:20960000-20960400 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
27 chr19:20960000-20960400 Flanking Active TSS Primary T cells from cord blood blood
28 chr19:20960000-20960600 Enhancers Primary B cells from peripheral blood blood
29 chr19:20960000-20960600 Enhancers Primary T cells fromperipheralblood blood
30 chr19:20960000-20960600 Enhancers Primary T helper 17 cells PMA-I stimulated --
31 chr19:20960000-20960800 Flanking Active TSS Dnd41 blood
32 chr19:20960000-20961200 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
33 chr19:20960000-20961800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
34 chr19:20960000-20963000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
35 chr19:20960000-20963200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
36 chr19:20960000-20963200 Weak transcription Brain Anterior Caudate brain
37 chr19:20960000-20963400 Weak transcription Fetal Muscle Leg muscle
38 chr19:20960000-20963600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
39 chr19:20960000-20964600 Weak transcription Primary mononuclear cells fromperipheralblood Blood
40 chr19:20960000-20966600 Weak transcription Fetal Lung lung
41 chr19:20960000-20966800 Weak transcription Fetal Muscle Trunk muscle
42 chr19:20960000-20966800 Weak transcription Skeletal Muscle Female skeletal muscle
43 chr19:20960000-20967200 Weak transcription Rectal Smooth Muscle rectum
44 chr19:20960000-20967600 Weak transcription Adipose Nuclei Adipose
45 chr19:20960000-20968000 Weak transcription Colonic Mucosa Colon
46 chr19:20960000-20975600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
47 chr19:20960000-20976200 Weak transcription H9 Cell Line embryonic stem cell
48 chr19:20960000-20976600 Weak transcription ES-WA7 Cell Line embryonic stem cell
49 chr19:20960000-20977600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
50 chr19:20960000-20977600 Weak transcription Brain Hippocampus Middle brain

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Last update: Aug 31, 2015