The 2.0 version of rSNPBase

Variant report

Variant rs10420676
Chromosome Location chr19:20963369-20963370
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:95 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:20959600-20963400 Weak transcription Small Intestine intestine
2 chr19:20959600-20978200 Weak transcription Spleen Spleen
3 chr19:20959800-20963600 Weak transcription Primary T helper naive cells from peripheral blood blood
4 chr19:20959800-20963600 Weak transcription Lung lung
5 chr19:20959800-20963600 Weak transcription Sigmoid Colon Sigmoid Colon
6 chr19:20959800-20967200 Weak transcription Primary T killer naive cells fromperipheralblood blood
7 chr19:20959800-20967600 Weak transcription Left Ventricle heart
8 chr19:20959800-20967800 Weak transcription Aorta Aorta
9 chr19:20959800-20970400 Weak transcription Gastric stomach
10 chr19:20959800-20978400 Weak transcription Skeletal Muscle Male skeletal muscle
11 chr19:20960000-20963400 Weak transcription Fetal Muscle Leg muscle
12 chr19:20960000-20963600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
13 chr19:20960000-20964600 Weak transcription Primary mononuclear cells fromperipheralblood Blood
14 chr19:20960000-20966600 Weak transcription Fetal Lung lung
15 chr19:20960000-20966800 Weak transcription Fetal Muscle Trunk muscle
16 chr19:20960000-20966800 Weak transcription Skeletal Muscle Female skeletal muscle
17 chr19:20960000-20967200 Weak transcription Rectal Smooth Muscle rectum
18 chr19:20960000-20967600 Weak transcription Adipose Nuclei Adipose
19 chr19:20960000-20968000 Weak transcription Colonic Mucosa Colon
20 chr19:20960000-20975600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
21 chr19:20960000-20976200 Weak transcription H9 Cell Line embryonic stem cell
22 chr19:20960000-20976600 Weak transcription ES-WA7 Cell Line embryonic stem cell
23 chr19:20960000-20977600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
24 chr19:20960000-20977600 Weak transcription Brain Hippocampus Middle brain
25 chr19:20960000-20978000 Weak transcription Brain Inferior Temporal Lobe brain
26 chr19:20960000-20978200 Weak transcription Pancreas Pancrea
27 chr19:20960000-20978400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
28 chr19:20960000-20978400 Weak transcription Brain Cingulate Gyrus brain
29 chr19:20960000-20978400 Weak transcription HSMM muscle
30 chr19:20960000-20983800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
31 chr19:20960000-20987600 Weak transcription Brain Substantia Nigra brain
32 chr19:20960000-20987800 Weak transcription Placenta Amnion Placenta Amnion
33 chr19:20960200-20963400 Weak transcription Breast Myoepithelial Primary Cells Breast
34 chr19:20960200-20963400 Weak transcription NHEK skin
35 chr19:20960200-20963600 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
36 chr19:20960200-20963600 Weak transcription Fetal Brain Male brain
37 chr19:20960200-20963600 Weak transcription HMEC breast
38 chr19:20960200-20963800 Weak transcription Fetal Adrenal Gland Adrenal Gland
39 chr19:20960200-20964000 Enhancers Ovary ovary
40 chr19:20960200-20965200 Weak transcription Primary T helper cells PMA-I stimulated --
41 chr19:20960200-20966400 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
42 chr19:20960200-20966400 Weak transcription Rectal Mucosa Donor 29 rectum
43 chr19:20960200-20966600 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
44 chr19:20960200-20966600 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
45 chr19:20960200-20966600 Weak transcription Duodenum Smooth Muscle Duodenum
46 chr19:20960200-20966600 Weak transcription Fetal Kidney kidney
47 chr19:20960200-20967600 Weak transcription ES-I3 Cell Line embryonic stem cell
48 chr19:20960200-20967800 Weak transcription HepG2 liver
49 chr19:20960200-20968200 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
50 chr19:20960200-20979600 Weak transcription Pancreatic Islets Pancreatic Islet

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Last update: Aug 31, 2015